Rmu_sc0000854.1_g000041

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000854.1
OG0018579
Physical Location & Seq
Forward (+)
217306 .. 217646
341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000854.1_g000041.1.cds

Sequence Viewer

Length: 207 bp
atggaggatctctctgagctagagattaagaatttcgtcaagtccttcaacaagttcgtcgacttaaagagggagctcttccatagccatattgatgagctccagaaaatcatcgtcaatcaatgtaaactcaccggcaccaatcctctctcgcaagagatggcagctggtgccttttctattaatattggtaagtcctggaattga

Protein Analysis

68

Amino Acids

7.8

Weight (kDa)

6.05

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018579)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0170231 RchiOBHm_Chr5g0057291
rosa_multiflora Rmu_sc0000854.1_g000041 Rmu_sc0000857.1_g000007
rosa_roxburghii Rroxscaffold_2G00112110
rosa_samantha Rh2CG599900 Rh4DG167400 Rh7AG420400 Rh7DG444400
rosa_wichuraiana Rw0G021080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 137, 170
AccI GTMKAC 1 cut(s) 60
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 31
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 4 cut(s) 19, 76, 100, 167
AluI AGCT 4 cut(s) 19, 76, 100, 167
Alw21I GWGCWC 2 cut(s) 78, 102
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 124
BanI GGYRCC 2 cut(s) 137, 170
BanII GRGCYC 2 cut(s) 78, 102
Bbv12I GWGCWC 2 cut(s) 78, 102
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 139, 172
BmrFI CCNGG 1 cut(s) 199
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 176
BshNI GGYRCC 2 cut(s) 137, 170
BsiHKAI GWGCWC 2 cut(s) 78, 102
BsiSI CCGG 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 78, 102
Bsp143I GATC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 139, 172
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 137, 170
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 134
CviJI RGCY 5 cut(s) 19, 76, 87, 100, 167
CviKI_1 RGCY 5 cut(s) 19, 76, 87, 100, 167
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 2 cut(s) 76, 100
Eco24I GRGCYC 2 cut(s) 78, 102
Eco53kI GAGCTC 2 cut(s) 76, 100
EcoICRI GAGCTC 2 cut(s) 76, 100
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 78, 102
FaiI YATR 2 cut(s) 84, 90
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 165
FriOI GRGCYC 2 cut(s) 78, 102
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 86
HapII CCGG 1 cut(s) 135
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 61, 128
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 61, 128
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 73, 105
LpnPI CCDG 4 cut(s) 116, 148, 153, 184
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 78, 102
MluCI AATT 2 cut(s) 31, 202
MnlI CCTC 2 cut(s) 63, 156
MseI TTAA 3 cut(s) 27, 65, 183
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 2 cut(s) 139, 172
PciSI GCTCTTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 183
Psp124BI GAGCTC 2 cut(s) 78, 102
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 139, 172
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 2 cut(s) 78, 102
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 3 cut(s) 27, 65, 183
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 2 cut(s) 78, 102
SetI ASST 4 cut(s) 21, 78, 102, 169
SgeI CNNG 8 cut(s) 32, 52, 64, 115, 147, 163, 167, 180
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 2 cut(s) 31, 202
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 2 cut(s) 78, 102
StyD4I CCNGG 1 cut(s) 197
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 31, 202
Tru1I TTAA 3 cut(s) 27, 65, 183
Tru9I TTAA 3 cut(s) 27, 65, 183
TseI GCWGC 1 cut(s) 164
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.