Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019274

Physical Location & Seq

Genomic Coordinates Forward (+)

65085320 .. 65085517

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCTATGGGGGATTATGTTCTATAATGATATACTGATGCAAGCTGGGCATCTTGGTAGTGTCGAGTGGGAGCTCCTTTTCCTTAAGGATGGATCTAATTTTACTTCACATAAGGGTTGGGCGTTCCCTCAAAGAGTCTATTTCAATGGTGATTACTGTGGCATGCCACCCCTAGATGCGTATCCGTCGGTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

65

Amino Acids

7.49

Weight (kDa)

4.86

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COB_C	PF25079	15 - 62	4e-09	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019274)

Species	Orthologous Gene IDs
malus_domestica	MD14G1215000.v1.1
pyrus_communis	pycom12433g00020
rosa_chinensis	RchiOBHm_Chr5g0059981 RchiOBHm_Chr7g0183441
rosa_multiflora	Rmu_sc0000814.1_g000035 Rmu_sc0022860.1_g000001
rosa_samantha	Rh5BG403600 Rh5CG427600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	44, 73
AluI	AGCT	2 cut(s)	44, 73
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	192
BmsI	GCATC	3 cut(s)	27, 58, 166
BsaBI	GATNNNNATC	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	83
BssMI	GATC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	42, 164
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	42, 164
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	2 cut(s)	44, 73
CviKI_1	RGCY	2 cut(s)	44, 73
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	1 cut(s)	166
FaiI	YATR	6 cut(s)	7, 17, 24, 32, 111, 164
FatI	CATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	173
GsaI	CCCAGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	135
HphI	GGTGA	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	40, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	70, 78
LpnPI	CCDG	1 cut(s)	30
LweI	GCATC	3 cut(s)	27, 58, 166
MaeI	CTAG	1 cut(s)	173
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	166
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	46, 75
SfaNI	GCATC	3 cut(s)	27, 58, 166
SgeI	CNNG	6 cut(s)	53, 57, 65, 76, 175, 185
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.