Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000814.1

Orthogroup ID

OG0019274

Physical Location & Seq

Genomic Coordinates Forward (+)

99259 .. 103447

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000814.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgcaaaagcaaaacgggaacttgaaactaaagataaggcgtgtagtggatgaagcatttgatccacttgatccctctggaaatatcacgatcagatgggatgtcatgggcttcactactgatggctatgagttaatgcagaagttcacgctgcagcctcgtgaaggctgcgacggggtggcctggcttgccggacagaggcaaggggtcgagccggaccagtctgcagtcggatggagtcgctggcgaccgatttgctgtgctgcccagagccttgtagttgcaggtgaggatcgagccaattcggtagcgtgttttcaggttactgttggtcaagcaggaactaataaccgaactaccacgcttccttacaacttcaccctgaatgcaccggggcctgggtatatttgtggccctgcaaagatagttaaacacactatatttcctactccaggtggaaggagaataactcaagctatcaatgatactgcaatgctatgggggattaagttctataatgatatactgatgcaagctgggcatcttggtagtgtcgagtcggagctccttttccttaaggatggatctaattttacttcacataagggttgggcgttccctcaaagagtctatttcaatggtgattactgtggcatgccacccccagatgcgtatccgtcggtgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009791 GO:0009832 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010215 GO:0010383 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0022414 GO:0022607 GO:0030198 GO:0030243 GO:0030244 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0061458 GO:0070589 GO:0070592 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

229

Amino Acids

25.25

Weight (kDa)

7.59

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019274)

Species	Orthologous Gene IDs
malus_domestica	MD14G1215000.v1.1
pyrus_communis	pycom12433g00020
rosa_chinensis	RchiOBHm_Chr5g0059981 RchiOBHm_Chr7g0183441
rosa_multiflora	Rmu_sc0000814.1_g000035 Rmu_sc0022860.1_g000001
rosa_samantha	Rh5BG403600 Rh5CG427600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AclWI	GGATC	4 cut(s)	56, 65, 300, 592
AfiI	CCNNNNNNNGG	4 cut(s)	164, 198, 398, 452
AflII	CTTAAG	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	25, 637
AjnI	CCWGG	3 cut(s)	182, 397, 451
AluBI	AGCT	3 cut(s)	476, 536, 565
AluI	AGCT	3 cut(s)	476, 536, 565
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	4 cut(s)	56, 65, 300, 592
AoxI	GGCC	3 cut(s)	180, 395, 412
ApeKI	GCWGC	4 cut(s)	151, 154, 168, 263
AspS9I	GGNCC	3 cut(s)	217, 395, 413
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	299, 370, 653
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	138, 155, 166, 250
BccI	CCATC	4 cut(s)	90, 116, 228, 575
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	3 cut(s)	184, 399, 453
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	152, 225
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	4 cut(s)	152, 155, 169, 264
BlsI	GCNGC	4 cut(s)	153, 156, 170, 265
Bme1390I	CCNGG	4 cut(s)	184, 393, 399, 453
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	217, 395, 413
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	4 cut(s)	184, 393, 399, 453
BmsI	GCATC	3 cut(s)	519, 550, 658
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	392, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 198, 398, 452
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	3 cut(s)	184, 399, 453
BseDI	CCNNGG	2 cut(s)	392, 398
BseGI	GGATG	4 cut(s)	55, 106, 239, 586
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	164, 198, 398, 452
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	138, 155, 166, 250
BseYI	CCCAGC	1 cut(s)	536
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	182, 397, 414
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	3 cut(s)	192, 215, 392
BslI	CCNNNNNNNGG	4 cut(s)	164, 198, 398, 452
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	182, 397, 414
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	5 cut(s)	61, 70, 90, 292, 584
BspANI	GGCC	3 cut(s)	182, 397, 414
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	2 cut(s)	156, 229
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	4 cut(s)	56, 65, 300, 592
BspTI	CTTAAG	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	392, 398
BssMI	GATC	5 cut(s)	61, 70, 90, 292, 584
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	184, 399, 453
Bst4CI	ACNGT	2 cut(s)	328, 650
BstAFI	CTTAAG	1 cut(s)	575
BstC8I	GCNNGC	4 cut(s)	189, 245, 534, 656
BstENI	CCTNNNNNAGG	2 cut(s)	162, 450
BstF5I	GGATG	4 cut(s)	55, 106, 239, 586
BstKTI	GATC	5 cut(s)	64, 73, 93, 295, 587
BstMBI	GATC	5 cut(s)	61, 70, 90, 292, 584
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 538
BstNI	CCWGG	3 cut(s)	184, 399, 453
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	4 cut(s)	182, 391, 397, 451
BstSFI	CTRYAG	2 cut(s)	152, 225
BstV1I	GCAGC	4 cut(s)	138, 155, 166, 250
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	182, 397, 414
BtsCI	GGATG	4 cut(s)	55, 106, 239, 586
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	4 cut(s)	189, 245, 534, 656
Cfr13I	GGNCC	3 cut(s)	217, 395, 413
CviAII	CATG	2 cut(s)	106, 655
DpnI	GATC	5 cut(s)	63, 72, 92, 294, 586
DpnII	GATC	5 cut(s)	61, 70, 90, 292, 584
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 450
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	3 cut(s)	182, 397, 451
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	2 cut(s)	109, 658
FaiI	YATR	9 cut(s)	107, 129, 405, 440, 499, 516, 524, 603, 656
FatI	CATG	2 cut(s)	105, 654
Fnu4HI	GCNGC	4 cut(s)	152, 155, 169, 264
FokI	GGATG	4 cut(s)	62, 113, 246, 593
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	4 cut(s)	152, 155, 169, 264
GluI	GCNGC	4 cut(s)	152, 155, 169, 264
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	182, 397, 414
HapII	CCGG	3 cut(s)	192, 215, 392
Hin1II	CATG	2 cut(s)	109, 658
HinfI	GANTC	3 cut(s)	238, 557, 627
HpaII	CCGG	3 cut(s)	192, 215, 392
HphI	GGTGA	3 cut(s)	299, 370, 653
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	95, 233, 562
Hpy188III	TCNNGA	3 cut(s)	78, 88, 161
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	2 cut(s)	176, 682
HpyAV	CCTTC	2 cut(s)	158, 453
HpyCH4III	ACNGT	2 cut(s)	328, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 538
Hsp92II	CATG	2 cut(s)	109, 658
Kzo9I	GATC	5 cut(s)	61, 70, 90, 292, 584
LmnI	GCTCC	2 cut(s)	562, 570
Lsp1109I	GCAGC	4 cut(s)	138, 155, 166, 250
LweI	GCATC	3 cut(s)	519, 550, 658
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	5 cut(s)	63, 72, 92, 294, 586
MboI	GATC	5 cut(s)	61, 70, 90, 292, 584
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	2 cut(s)	301, 589
MlyI	GAGTC	3 cut(s)	247, 566, 636
MmeI	TCCRAC	2 cut(s)	211, 540
MnlI	CCTC	5 cut(s)	85, 168, 192, 283, 630
MseI	TTAA	4 cut(s)	134, 429, 507, 576
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	3 cut(s)	192, 215, 392
MspR9I	CCNGG	4 cut(s)	184, 393, 399, 453
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	3 cut(s)	184, 399, 453
MwoI	GCNNNNNNNGC	2 cut(s)	188, 538
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	5 cut(s)	61, 70, 90, 292, 584
NlaIII	CATG	2 cut(s)	109, 658
NlaIV	GGNNCC	1 cut(s)	396
NspI	RCATGY	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	153, 156, 170, 265
PleI	GAGTC	3 cut(s)	246, 565, 635
PpsI	GAGTC	3 cut(s)	246, 565, 635
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	182, 397, 451
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	3 cut(s)	182, 397, 451
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	3 cut(s)	217, 395, 413
PstI	CTGCAG	2 cut(s)	156, 229
PsuI	RGATCY	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	134, 429, 507, 576
SatI	GCNGC	4 cut(s)	152, 155, 169, 264
Sau3AI	GATC	5 cut(s)	61, 70, 90, 292, 584
Sau96I	GGNCC	3 cut(s)	217, 395, 413
SchI	GAGTC	3 cut(s)	247, 566, 636
ScrFI	CCNGG	4 cut(s)	184, 393, 399, 453
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	6 cut(s)	289, 324, 457, 478, 538, 567
SfaNI	GCATC	3 cut(s)	519, 550, 658
SfcI	CTRYAG	2 cut(s)	152, 225
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	471, 575
SmoI	CTYRAG	2 cut(s)	471, 575
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	2 cut(s)	301, 589
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	4 cut(s)	182, 391, 397, 451
TaaI	ACNGT	2 cut(s)	328, 650
TaqI	TCGA	3 cut(s)	210, 295, 555
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	301, 589
Tru1I	TTAA	4 cut(s)	134, 429, 507, 576
Tru9I	TTAA	4 cut(s)	134, 429, 507, 576
TseI	GCWGC	4 cut(s)	151, 154, 168, 263
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	217
XagI	CCTNNNNNAGG	2 cut(s)	162, 450
XceI	RCATGY	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.