Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019274

Physical Location & Seq

Genomic Coordinates Forward (+)

65432998 .. 65445629

Gene Structure 12632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATCTTCAACTCATTGCCATCGACTCCTTACAACCAGCAAATTGGAACTTGTGGCAAATGGGGAGGGCTGGTCGAATGTTCATGGTTACTTGATCCTGCCTATTTATGGATGCAGGATCGAGTCAATTCAGTAGTGCGTTTTCAGGTTACTGTTGGTCAAGCAGGAACTAATAACCGAACTAACAAGCTTCCTTACAACTTCACCTTGAGTGCACCGGGGCCTGGGTATATTTGTGGCCCTGCAAAGATAGTTAAACACACTATATTTCCTACTCCAGGTGGAAGGAGAATAACTCAAGCTATCAATGGTACTGCAATGCTATGGGGGATTATGTTCTATAATGATATACTGATGCAAGCTGGGCATCTTGGTAGTGTCGAGTGGGAGCTCCTTTTCCTTAAGGATGGATCTAATTTTACTTCACATAAGGGTTGGGCGTTCCCTCAAAGAGTCTATTTCAATGGTGATTACTGTGGCATGCCACCCCTAGATGCGTATCCGTCGGTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009791 GO:0009832 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010215 GO:0010383 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0022414 GO:0022607 GO:0030198 GO:0030243 GO:0030244 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0061458 GO:0070589 GO:0070592 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

171

Amino Acids

19.04

Weight (kDa)

8.71

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	2 - 103	5.5e-15	COBRA-like protein
COB_C	PF25079	98 - 168	3.3e-10	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019274)

Species	Orthologous Gene IDs
malus_domestica	MD14G1215000.v1.1
pyrus_communis	pycom12433g00020
rosa_chinensis	RchiOBHm_Chr5g0059981 RchiOBHm_Chr7g0183441
rosa_multiflora	Rmu_sc0000814.1_g000035 Rmu_sc0022860.1_g000001
rosa_samantha	Rh5BG403600 Rh5CG427600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	89, 126, 418
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	3 cut(s)	108, 224, 278
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	10, 463
AjnI	CCWGG	2 cut(s)	223, 277
AluBI	AGCT	4 cut(s)	190, 302, 362, 391
AluI	AGCT	4 cut(s)	190, 302, 362, 391
Alw21I	GWGCWC	2 cut(s)	217, 393
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	89, 126, 418
AoxI	GGCC	2 cut(s)	221, 238
ApaLI	GTGCAC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	221, 239
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	196, 479
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	217, 393
BccI	CCATC	2 cut(s)	28, 401
BciT130I	CCWGG	2 cut(s)	225, 279
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	491
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	510
Bme1390I	CCNGG	3 cut(s)	219, 225, 279
BmgT120I	GGNCC	2 cut(s)	221, 239
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	219, 225, 279
BmsI	GCATC	4 cut(s)	102, 345, 376, 484
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	229, 282
BpuMI	CCSGG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	218, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 224, 278
Bse3DI	GCAATG	2 cut(s)	14, 324
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	225, 279
BseDI	CCNNGG	2 cut(s)	218, 224
BseGI	GGATG	2 cut(s)	117, 412
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	108, 224, 278
BseMI	GCAATG	2 cut(s)	14, 324
BseSI	GKGCMC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	2 cut(s)	223, 240
BsiHKAI	GWGCWC	2 cut(s)	217, 393
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	108, 224, 278
BsnI	GGCC	2 cut(s)	223, 240
Bsp1286I	GDGCHC	2 cut(s)	217, 393
Bsp143I	GATC	4 cut(s)	3, 94, 118, 410
BspANI	GGCC	2 cut(s)	223, 240
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	3 cut(s)	89, 126, 418
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	2 cut(s)	14, 324
BssECI	CCNNGG	2 cut(s)	218, 224
BssMI	GATC	4 cut(s)	3, 94, 118, 410
Bst2UI	CCWGG	2 cut(s)	225, 279
Bst4CI	ACNGT	2 cut(s)	154, 476
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	360, 482
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	117, 412
BstKTI	GATC	4 cut(s)	6, 97, 121, 413
BstMBI	GATC	4 cut(s)	3, 94, 118, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	2 cut(s)	225, 279
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	217, 223, 277
BstSLI	GKGCMC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	223, 240
BtsCI	GGATG	2 cut(s)	117, 412
Cac8I	GCNNGC	2 cut(s)	360, 482
Cfr13I	GGNCC	2 cut(s)	221, 239
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	84, 481
CviJI	RGCY	7 cut(s)	70, 190, 223, 240, 302, 362, 391
CviKI_1	RGCY	7 cut(s)	70, 190, 223, 240, 302, 362, 391
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	4 cut(s)	5, 96, 120, 412
DpnII	GATC	4 cut(s)	3, 94, 118, 410
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	223, 277
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	2 cut(s)	87, 484
FatI	CATG	2 cut(s)	83, 480
FokI	GGATG	2 cut(s)	124, 419
FriOI	GRGCYC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	491
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	223, 240
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	2 cut(s)	87, 484
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	25, 123, 453
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	196, 479
Hpy166II	GTNNAC	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	2 cut(s)	154, 476
HpyCH4V	TGCA	6 cut(s)	115, 215, 245, 317, 358, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	87, 484
Kzo9I	GATC	4 cut(s)	3, 94, 118, 410
LmnI	GCTCC	2 cut(s)	388, 396
LweI	GCATC	4 cut(s)	102, 345, 376, 484
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	87, 148
MalI	GATC	4 cut(s)	5, 96, 120, 412
MboI	GATC	4 cut(s)	3, 94, 118, 410
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	217, 393
MluCI	AATT	3 cut(s)	42, 127, 415
MlyI	GAGTC	3 cut(s)	19, 132, 462
MnlI	CCTC	2 cut(s)	59, 456
MseI	TTAA	2 cut(s)	255, 402
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	219, 225, 279
MvaI	CCWGG	2 cut(s)	225, 279
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	3, 94, 118, 410
NlaIII	CATG	2 cut(s)	87, 484
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	1 cut(s)	484
PaeI	GCATGC	1 cut(s)	484
PleI	GAGTC	3 cut(s)	19, 131, 461
PpsI	GAGTC	3 cut(s)	19, 131, 461
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	223, 277
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	223, 277
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	221, 239
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	255, 402
Sau3AI	GATC	4 cut(s)	3, 94, 118, 410
Sau96I	GGNCC	2 cut(s)	221, 239
SchI	GAGTC	3 cut(s)	19, 132, 462
ScrFI	CCNGG	3 cut(s)	219, 225, 279
SduI	GDGCHC	2 cut(s)	217, 393
SetI	ASST	7 cut(s)	150, 192, 209, 283, 304, 364, 393
SfaNI	GCATC	4 cut(s)	102, 345, 376, 484
SmlI	CTYRAG	3 cut(s)	208, 297, 401
SmoI	CTYRAG	3 cut(s)	208, 297, 401
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	3 cut(s)	42, 127, 415
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	217, 223, 277
TaaI	ACNGT	2 cut(s)	154, 476
TaqI	TCGA	4 cut(s)	23, 75, 121, 381
TasI	AATT	3 cut(s)	42, 127, 415
Tru1I	TTAA	2 cut(s)	255, 402
Tru9I	TTAA	2 cut(s)	255, 402
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	492
Vha464I	CTTAAG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	276
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.