RchiOBHm_Chr7g0183441

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019274
Physical Location & Seq
Reverse (-)
4316577 .. 4317130
554 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16366

Sequence Viewer

Length: 462 bp
ATGAACTATTCACAGTGGACACTTGCTGCTCAGCACCCAAATCTAAACAAACTTGCCAATGTTTCTGGTTTTCTGTATAGGCCACTCAATAATTATGGCTCAATAAATGACACAGGAATGTTTTATGGCATAAAATATGTTAATGATCCACAAATGGAAGCGGGGCCTCATGGATATGTCTATACAGAGTTGATTCTTAAAAAGGAGAAGAGGACATTTACATTAGAGCATGGTTGGGCATTTCCTCTGAAAATTTACTTAAGTGGTGATGAGTGTATGATGCTCCTTCCTGATATATATCCTCATCTACCTAACTTTGCCTGTCTTGAAGCAAATCCAATTTCAATTCATCTTCTACACTTAATACCCTTAAGGGGTGTTTGTTACATGGGATTGGACATCCTTATCAGCTTGTGTTACACTAATCCCATGTTTGGCAACAACCATGACTATTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

6.35

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COB_C PF25079 1 - 101 9.7e-16 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019274)

Species Orthologous Gene IDs
malus_domestica MD14G1215000.v1.1
pyrus_communis pycom12433g00020
rosa_chinensis RchiOBHm_Chr5g0059981 RchiOBHm_Chr7g0183441
rosa_multiflora Rmu_sc0000814.1_g000035 Rmu_sc0022860.1_g000001
rosa_samantha Rh5BG403600 Rh5CG427600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 374, 434
AflII CTTAAG 2 cut(s) 259, 370
AgsI TTSAA 2 cut(s) 329, 345
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 80, 164
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 13
BfrI CTTAAG 2 cut(s) 259, 370
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 434
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 374, 434
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 82, 166
BslI CCNNNNNNNGG 2 cut(s) 374, 434
BsnI GGCC 2 cut(s) 82, 166
Bsp143I GATC 1 cut(s) 145
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 82, 166
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 140
BspTI CTTAAG 2 cut(s) 259, 370
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 2 cut(s) 259, 370
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 82, 166
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 164
CviAII CATG 5 cut(s) 170, 230, 388, 430, 446
CviJI RGCY 4 cut(s) 82, 99, 166, 411
CviKI_1 RGCY 4 cut(s) 82, 99, 166, 411
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 164
FaeI CATG 5 cut(s) 173, 233, 391, 433, 449
FatI CATG 5 cut(s) 169, 229, 387, 429, 445
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 2 cut(s) 82, 166
Hin1II CATG 5 cut(s) 173, 233, 391, 433, 449
HinfI GANTC 1 cut(s) 193
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 290, 326
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 5 cut(s) 173, 233, 391, 433, 449
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 4 cut(s) 51, 99, 303, 334
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 383, 416
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 220, 344
MluCI AATT 4 cut(s) 91, 252, 339, 345
MnlI CCTC 4 cut(s) 177, 204, 255, 312
MseI TTAA 6 cut(s) 141, 198, 260, 362, 371, 456
MslI CAYNNNNRTG 2 cut(s) 116, 174
MspCI CTTAAG 2 cut(s) 259, 370
NdeII GATC 1 cut(s) 145
NlaIII CATG 5 cut(s) 173, 233, 391, 433, 449
NlaIV GGNNCC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
RseI CAYNNNNRTG 2 cut(s) 116, 174
SaqAI TTAA 6 cut(s) 141, 198, 260, 362, 371, 456
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 164
SetI ASST 2 cut(s) 313, 413
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 116, 174
SmlI CTYRAG 2 cut(s) 259, 370
SmoI CTYRAG 2 cut(s) 259, 370
Sse9I AATT 4 cut(s) 91, 252, 339, 345
SsiI CCGC 1 cut(s) 161
TaaI ACNGT 1 cut(s) 15
TasI AATT 4 cut(s) 91, 252, 339, 345
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 6 cut(s) 141, 198, 260, 362, 371, 456
Tru9I TTAA 6 cut(s) 141, 198, 260, 362, 371, 456
TscAI CASTG 1 cut(s) 20
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 17, 338
TspRI CASTG 1 cut(s) 20
Vha464I CTTAAG 2 cut(s) 259, 370
XapI RAATTY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.