RchiOBHm_Chr5g0067251

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
73445313 .. 73449299
3987 bp
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UTR
Exon/CDS
Intron
PRQ34298

Sequence Viewer

Length: 1473 bp
ATGGGAGCTCGCTGCTCCAAACTATCTCTCTGCTTCTGGCCTTCTAACATCAAATCCAATCTCAATGATTCTTCAGACAAAGAGAATGGGAAGAAGAACGAGAAGGACTCGCTTCCTGGGTTCGTCGAGTTCAGCTTGGACCAGTTAAAAGCCGCCACGTCGGGGTTCTCGTCGGAGAACGTGGTCTCCGAGCACGGAGAGAAAGCTCCCAATGTCGTCTACAAGGGGACTCTTGAAGACGGCCGTGGGATCGCCGTTAAGCGGTTCAACCGATCGGCTTGGCCCGATTCGCGCCAATTTCTTGAGGAGGCTAGAGCTGTGGGGCAGCTGAGGAACGAGCGTCTGGCGAATTTGATTGGGTGTTGCTGTGAGGGTGATGACAGATTGCTTGTGGCTGAATTCATGCCTAATGAAACTCTCTCTAAGCATCTATTCCACTGGGAGACTCAGCCGATGAAATGGGCAATGAGGTTGCGAGTGGCTTTGTATCTTGCGCAAGCTTTGGAGTATTGCAGTAGTAGTGGGCAGGCATTGTACCATGATCTTAATGCTTATAGGGTTCTGTTTGATCAGGATGGAAATCCCAGGCTCTCCTGCTTTGGTCTGATGAAGAATAGCAAAGATGGAAAGAGTTATAGTACCAACCTGGCTTTCACCCCTCCAGAATACTTGAGGACAGGAAGAGTGATCCCAGAAAGTTTGGTTTACAGCTTTGGGACCCTATTGCTTGATCTGCTCAGTGGCAAACATATCCCCCCAAGCCATGCACTTGACCTGATACGCGGCAAAAACTTTTTAATGCTGATGGACTCATGCTTGGAAGGTCATTTCTCAAATGATGATGGAACTGAGCTGGTACGGTTAGCATCACGGTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCTCTTGTGACTGCCCTTATTCCTCTTCAAAAGGAAACAGAGGTTCCATCCTATGTTTTGCTTGGTATTCCGCATGGAGATGTGCCTGCAAATCAGACATCATTGTCACCTCTTGGTGACGCTTGCTCAAGATTAGATCTTACTGCCATACATGAAATCTTGGAGAAGGTTGCTTACAAGGATGACGAGGGGGTTGCAAATGATCTTTCTTTCCAAATGTGGACAAATCAAATACAAGAGACATTGAATTCCAAGAAACATGGGGATGCTGCATTTCGAGCGAAAGATTTTGCTACTGCCATAGATTCTTACACAGAATTCATTGATGGCGGGACCATGATATCTCCAACTGTGTTTGCTAGACGTTGTTTGTGCTATTTGATGAATGATATGGCACAAGAAGCTCTTGGAGATGCCATGCAAGCCCTAGTAATAAACCCTGAATGGCCGACTGCTTTCTACCTTCAAGCGGCTGCCTTAAAGAGCCTAGGCATGGACAACGATGCGCAGGAAACTCTAAAAGATGGCGCATCCTTGGAAGAAAAAAAAGATAAAAACTGA

Protein Analysis

490

Amino Acids

54.53

Weight (kDa)

5.37

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 72 - 310 4.8e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 72 - 307 1.7e-21 Protein kinase domain
TPR_BSK1_C PF25575 344 - 461 1.3e-63 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1015
Acc16I TGCGCA 2 cut(s) 495, 1419
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 292, 783
AciI CCGC 6 cut(s) 153, 262, 783, 983, 1242, 1382
AclWI GGATC 2 cut(s) 257, 682
AcoI YGGCCR 2 cut(s) 241, 1358
AcsI RAATTY 4 cut(s) 349, 398, 1159, 1229
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 3 cut(s) 536, 640, 858
AfiI CCNNNNNNNGG 4 cut(s) 162, 261, 1381, 1405
AgsI TTSAA 5 cut(s) 236, 268, 941, 1159, 1379
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 3 cut(s) 115, 584, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 9 cut(s) 8, 135, 206, 317, 328, 500, 711, 853, 1316
AluI AGCT 9 cut(s) 8, 135, 206, 317, 328, 500, 711, 853, 1316
Alw21I GWGCWC 2 cut(s) 10, 195
Alw26I GTCTC 4 cut(s) 190, 437, 918, 1145
AlwI GGATC 2 cut(s) 257, 682
AoxI GGCC 5 cut(s) 38, 241, 281, 899, 1358
ApeKI GCWGC 4 cut(s) 12, 325, 1181, 1385
ApoI RAATTY 4 cut(s) 349, 398, 1159, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspA2I CCTAGG 1 cut(s) 1399
AspLEI GCGC 4 cut(s) 294, 496, 1420, 1442
AspS9I GGNCC 4 cut(s) 139, 282, 717, 1245
AsuHPI GGTGA 4 cut(s) 386, 646, 1011, 1040
AvaII GGWCC 3 cut(s) 139, 717, 1245
AvrII CCTAGG 1 cut(s) 1399
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 1070, 1102
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 10, 195
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 337, 1168, 1372
BccI CCATC 7 cut(s) 569, 617, 799, 836, 967, 1232, 1430
BceAI ACGGC 3 cut(s) 228, 239, 256
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BciT130I CCWGG 3 cut(s) 117, 586, 647
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 4 cut(s) 190, 437, 918, 1145
BfaI CTAG 4 cut(s) 312, 1272, 1340, 1400
BglII AGATCT 1 cut(s) 1048
BisI GCNGC 7 cut(s) 13, 153, 326, 784, 1182, 1383, 1386
BlnI CCTAGG 1 cut(s) 1399
BlsI GCNGC 7 cut(s) 14, 154, 327, 785, 1183, 1384, 1387
Bme1390I CCNGG 3 cut(s) 117, 586, 647
Bme18I GGWCC 3 cut(s) 139, 717, 1245
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 4 cut(s) 139, 282, 717, 1245
BmiI GGNNCC 4 cut(s) 718, 719, 957, 1246
BmrFI CCNGG 3 cut(s) 117, 586, 647
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 6 cut(s) 436, 875, 1168, 1315, 1405, 1451
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 3 cut(s) 323, 691, 1024
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 5 cut(s) 116, 244, 584, 1399, 1446
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 261, 1381, 1405
Bse1I ACTGG 2 cut(s) 142, 443
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 3 cut(s) 117, 586, 647
BseDI CCNNGG 5 cut(s) 116, 244, 584, 1399, 1446
BseGI GGATG 5 cut(s) 580, 959, 1099, 1183, 1442
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 162, 261, 1381, 1405
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 320, 461, 751, 840
BseNI ACTGG 2 cut(s) 142, 443
BseRI GAGGAG 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 337, 1168, 1372
Bsh1236I CGCG 2 cut(s) 292, 783
Bsh1285I CGRYCG 2 cut(s) 244, 275
BshFI GGCC 5 cut(s) 40, 243, 283, 901, 1360
BsiEI CGRYCG 2 cut(s) 244, 275
BsiHKAI GWGCWC 2 cut(s) 10, 195
BslFI GGGAC 3 cut(s) 241, 730, 1258
BslI CCNNNNNNNGG 4 cut(s) 162, 261, 1381, 1405
BsmAI GTCTC 4 cut(s) 190, 437, 918, 1145
BsmFI GGGAC 3 cut(s) 241, 730, 1258
BsnI GGCC 5 cut(s) 40, 243, 283, 901, 1360
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 10, 195
Bsp143I GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
BspACI CCGC 6 cut(s) 153, 262, 783, 983, 1242, 1382
BspANI GGCC 5 cut(s) 40, 243, 283, 901, 1360
BspCNI CTCAG 4 cut(s) 321, 460, 750, 841
BspFNI CGCG 2 cut(s) 292, 783
BspLI GGNNCC 4 cut(s) 718, 719, 957, 1246
BspPI GGATC 2 cut(s) 257, 682
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 142, 443
BssECI CCNNGG 5 cut(s) 116, 244, 584, 1399, 1446
BssMI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 2 cut(s) 1399, 1446
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 3 cut(s) 117, 586, 647
Bst4CI ACNGT 3 cut(s) 861, 873, 1264
Bst6I CTCTTC 2 cut(s) 676, 942
BstC8I GCNNGC 6 cut(s) 10, 498, 528, 999, 1036, 1335
BstDEI CTNAG 5 cut(s) 329, 423, 447, 737, 849
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 5 cut(s) 580, 959, 1099, 1183, 1442
BstFNI CGCG 2 cut(s) 292, 783
BstHHI GCGC 4 cut(s) 294, 496, 1420, 1442
BstKTI GATC 8 cut(s) 252, 275, 544, 571, 690, 733, 1051, 1117
BstMAI GTCTC 4 cut(s) 190, 437, 918, 1145
BstMBI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
BstMCI CGRYCG 2 cut(s) 244, 275
BstMWI GCNNNNNNNGC 5 cut(s) 289, 733, 1190, 1313, 1334
BstNI CCWGG 3 cut(s) 117, 586, 647
BstSCI CCNGG 3 cut(s) 115, 584, 645
BstUI CGCG 2 cut(s) 292, 783
BstV1I GCAGC 3 cut(s) 337, 1168, 1372
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 1048
BstZI CGGCCG 1 cut(s) 241
BsuRI GGCC 5 cut(s) 40, 243, 283, 901, 1360
BtgI CCRYGG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 5 cut(s) 580, 959, 1099, 1183, 1442
BtsIMutI CAGTG 2 cut(s) 436, 745
Cac8I GCNNGC 6 cut(s) 10, 498, 528, 999, 1036, 1335
CfoI GCGC 4 cut(s) 294, 496, 1420, 1442
Cfr13I GGNCC 4 cut(s) 139, 282, 717, 1245
CseI GACGC 2 cut(s) 329, 1040
Csp6I GTAC 3 cut(s) 535, 639, 857
CviQI GTAC 3 cut(s) 535, 639, 857
DdeI CTNAG 5 cut(s) 329, 423, 447, 737, 849
DpnI GATC 8 cut(s) 251, 274, 543, 570, 689, 732, 1050, 1116
DpnII GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
DrdI GACNNNNNNGTC 1 cut(s) 1015
DseDI GACNNNNNNGTC 1 cut(s) 1015
EaeI YGGCCR 2 cut(s) 241, 1358
EagI CGGCCG 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 676, 942
EarI CTCTTC 2 cut(s) 676, 942
Ecl136II GAGCTC 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 1399, 1446
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 1254
Eco47I GGWCC 3 cut(s) 139, 717, 1245
Eco52I CGGCCG 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 717
EcoRI GAATTC 3 cut(s) 398, 1159, 1229
EcoRII CCWGG 3 cut(s) 115, 584, 645
EcoRV GATATC 1 cut(s) 1254
EcoT14I CCWWGG 2 cut(s) 1399, 1446
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 1399, 1446
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 3 cut(s) 241, 730, 1258
FauI CCCGC 1 cut(s) 1235
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 7 cut(s) 13, 153, 326, 784, 1182, 1383, 1386
FokI GGATG 5 cut(s) 587, 946, 1106, 1190, 1429
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 7 cut(s) 13, 153, 326, 784, 1182, 1383, 1386
FspBI CTAG 4 cut(s) 312, 1272, 1340, 1400
FspI TGCGCA 2 cut(s) 495, 1419
GlaI GCGC 4 cut(s) 293, 495, 1419, 1441
GluI GCNGC 7 cut(s) 13, 153, 326, 784, 1182, 1383, 1386
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 5 cut(s) 40, 243, 283, 901, 1360
HgaI GACGC 2 cut(s) 329, 1040
HhaI GCGC 4 cut(s) 294, 496, 1420, 1442
Hin6I GCGC 4 cut(s) 292, 494, 1418, 1440
HinP1I GCGC 4 cut(s) 292, 494, 1418, 1440
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 7 cut(s) 68, 107, 229, 287, 445, 809, 1217
HphI GGTGA 4 cut(s) 386, 646, 1011, 1040
Hpy166II GTNNAC 3 cut(s) 220, 706, 1134
Hpy188I TCNGA 5 cut(s) 76, 175, 190, 606, 1008
Hpy188III TCNNGA 6 cut(s) 233, 302, 572, 662, 893, 1041
Hpy8I GTNNAC 3 cut(s) 220, 706, 1134
Hpy99I CGWCG 3 cut(s) 128, 163, 175
HpyAV CCTTC 5 cut(s) 51, 97, 815, 1072, 1385
HpyCH4III ACNGT 3 cut(s) 861, 873, 1264
HpyCH4IV ACGT 3 cut(s) 158, 180, 1276
HpyCH4V TGCA 7 cut(s) 513, 767, 880, 1001, 1109, 1184, 1333
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 733, 1190, 1313, 1334
HpyF3I CTNAG 5 cut(s) 329, 423, 447, 737, 849
HpySE526I ACGT 3 cut(s) 158, 180, 1276
HspAI GCGC 4 cut(s) 292, 494, 1418, 1440
KflI GGGWCCC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
LmnI GCTCC 3 cut(s) 5, 20, 211
Lsp1109I GCAGC 3 cut(s) 337, 1168, 1372
LweI GCATC 6 cut(s) 436, 875, 1168, 1315, 1405, 1451
MaeI CTAG 4 cut(s) 312, 1272, 1340, 1400
MaeII ACGT 3 cut(s) 158, 180, 1276
MaeIII GTNAC 3 cut(s) 919, 1017, 1028
MalI GATC 8 cut(s) 251, 274, 543, 570, 689, 732, 1050, 1116
MboI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
MboII GAAGA 8 cut(s) 63, 103, 106, 248, 622, 693, 929, 1463
MflI RGATCY 1 cut(s) 1048
MhlI GDGCHC 2 cut(s) 10, 195
MluCI AATT 5 cut(s) 296, 349, 398, 1159, 1229
MlyI GAGTC 4 cut(s) 101, 223, 439, 803
MmeI TCCRAC 2 cut(s) 153, 1283
MseI TTAA 5 cut(s) 146, 258, 546, 797, 1391
MslI CAYNNNNRTG 3 cut(s) 871, 990, 1176
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 3 cut(s) 117, 586, 647
MvaI CCWGG 3 cut(s) 117, 586, 647
MvnI CGCG 2 cut(s) 292, 783
MwoI GCNNNNNNNGC 5 cut(s) 289, 733, 1190, 1313, 1334
NdeII GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
NlaIV GGNNCC 4 cut(s) 718, 719, 957, 1246
NmuCI GTSAC 3 cut(s) 919, 1017, 1028
NsbI TGCGCA 2 cut(s) 495, 1419
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 186
PfeI GAWTC 3 cut(s) 68, 287, 1217
PkrI GCNGC 7 cut(s) 14, 154, 327, 785, 1183, 1384, 1387
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 4 cut(s) 101, 223, 439, 803
PpsI GAGTC 4 cut(s) 101, 223, 439, 803
PpuMI RGGWCCY 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 3 cut(s) 115, 584, 645
PspGI CCWGG 3 cut(s) 115, 584, 645
PspN4I GGNNCC 4 cut(s) 718, 719, 957, 1246
PspPI GGNCC 4 cut(s) 139, 282, 717, 1245
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 1 cut(s) 1048
PvuI CGATCG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 3 cut(s) 536, 640, 858
RsaNI GTAC 3 cut(s) 535, 639, 857
RseI CAYNNNNRTG 3 cut(s) 871, 990, 1176
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 146, 258, 546, 797, 1391
SatI GCNGC 7 cut(s) 13, 153, 326, 784, 1182, 1383, 1386
Sau3AI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1048, 1114
Sau96I GGNCC 4 cut(s) 139, 282, 717, 1245
SchI GAGTC 4 cut(s) 101, 223, 439, 803
ScrFI CCNGG 3 cut(s) 117, 586, 647
SduI GDGCHC 2 cut(s) 10, 195
SfaNI GCATC 6 cut(s) 436, 875, 1168, 1315, 1405, 1451
SinI GGWCC 3 cut(s) 139, 717, 1245
SmiMI CAYNNNNRTG 3 cut(s) 871, 990, 1176
SmlI CTYRAG 3 cut(s) 302, 670, 1039
SmoI CTYRAG 3 cut(s) 302, 670, 1039
Sse9I AATT 5 cut(s) 296, 349, 398, 1159, 1229
SsiI CCGC 6 cut(s) 153, 262, 783, 983, 1242, 1382
SspMI CTAG 4 cut(s) 312, 1272, 1340, 1400
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 115, 584, 645
StyI CCWWGG 2 cut(s) 1399, 1446
TaaI ACNGT 3 cut(s) 861, 873, 1264
TaiI ACGT 3 cut(s) 161, 183, 1279
TaqI TCGA 2 cut(s) 126, 1189
TasI AATT 5 cut(s) 296, 349, 398, 1159, 1229
TauI GCSGC 3 cut(s) 155, 786, 1385
TfiI GAWTC 3 cut(s) 68, 287, 1217
Tru1I TTAA 5 cut(s) 146, 258, 546, 797, 1391
Tru9I TTAA 5 cut(s) 146, 258, 546, 797, 1391
TscAI CASTG 2 cut(s) 443, 745
TseFI GTSAC 3 cut(s) 919, 1017, 1028
TseI GCWGC 4 cut(s) 12, 325, 1181, 1385
Tsp45I GTSAC 3 cut(s) 919, 1017, 1028
TspDTI ATGAA 8 cut(s) 391, 426, 470, 623, 900, 1080, 1222, 1310
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 443, 745
VpaK11BI GGWCC 3 cut(s) 139, 717, 1245
XapI RAATTY 4 cut(s) 349, 398, 1159, 1229
XmaJI CCTAGG 1 cut(s) 1399
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 4 cut(s) 312, 1272, 1340, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.