Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007595

Physical Location & Seq

Genomic Coordinates Forward (+)

52021524 .. 52023155

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTCGACCACTTCTCCTCCTCCTCCACCTCATCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTTCTGGGGACCCAGTTTGCTGGAGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGACGCTGATGAGACTTTTAAGGACTTGACTAAAAAAGAGTACCCTTTTGCCTTCATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTGTCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCCAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCTTGTGTTTTCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTGCATAAAGTATTTGCAGCTATTGCCATGGGAATTGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCATGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGCCATTGGAATCATAATAGACGCAACAACCCAAGGTGCTGTGGCGGATTGGATATTTGCAATTTCAATGGGTCTGGCATGTGGTGTGTTTATCTATGTAGCTGTAAACCATTTATTGGCAAAGGGTTACACACCCGATAAGGCAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

339

Amino Acids

36.36

Weight (kDa)

5.84

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	49 - 334	6.1e-53	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59010 AT5G59010
fragaria_vesca	FvH4_3g37400 FvH4_3g37400 FvH4_3g37400
malus_domestica	MD03G1081000.v1.1
prunus_persica	Prupe.6G065400_v2.0.a1 Prupe.6G065400_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1
pyrus_communis	pycom11g07340
rosa_chinensis	RchiOBHm_Chr5g0067251
rosa_laevigata	RLG00000035919
rosa_multiflora	Rmu_sc0000015.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013880
rosa_rugosa	Rorug05G0383200 Rorug05G0383300
rosa_samantha	Rh5AG442800 Rh5BG459900 Rh5CG482300 Rh5DG474800
rosa_wichuraiana	Rw5G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccII	CGCG	1 cut(s)	126
AciI	CCGC	7 cut(s)	57, 63, 72, 102, 105, 124, 833
AcoI	YGGCCR	2 cut(s)	73, 789
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	423, 904
AgsI	TTSAA	4 cut(s)	214, 470, 774, 855
AjnI	CCWGG	2 cut(s)	128, 190
AluBI	AGCT	4 cut(s)	635, 686, 890, 995
AluI	AGCT	4 cut(s)	635, 686, 890, 995
Alw26I	GTCTC	3 cut(s)	302, 446, 620
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	3 cut(s)	73, 131, 789
ApeKI	GCWGC	2 cut(s)	683, 746
AspLEI	GCGC	2 cut(s)	128, 746
AspS9I	GGNCC	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	695, 733
BceAI	ACGGC	2 cut(s)	94, 291
BciT130I	CCWGG	2 cut(s)	130, 192
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	302, 446, 620
BisI	GCNGC	5 cut(s)	57, 73, 105, 684, 747
BlsI	GCNGC	5 cut(s)	58, 74, 106, 685, 748
Bme1390I	CCNGG	2 cut(s)	130, 192
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	96, 244, 245
BmrFI	CCNGG	2 cut(s)	130, 192
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	5 cut(s)	273, 500, 536, 628, 708
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	213, 276
BpuEI	CTTGAG	2 cut(s)	441, 470
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	4 cut(s)	76, 190, 693, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 33
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 904
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	130, 192
BseDI	CCNNGG	4 cut(s)	76, 190, 693, 820
BseGI	GGATG	2 cut(s)	33, 186
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	423, 904
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	284, 615
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	4 cut(s)	8, 11, 14, 29
BseXI	GCAGC	2 cut(s)	695, 733
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	75, 133, 791
BslFI	GGGAC	4 cut(s)	256, 286, 440, 714
BslI	CCNNNNNNNGG	2 cut(s)	423, 904
BsmAI	GTCTC	3 cut(s)	302, 446, 620
BsmFI	GGGAC	4 cut(s)	256, 286, 440, 714
BsnI	GGCC	3 cut(s)	75, 133, 791
Bsp143I	GATC	2 cut(s)	138, 445
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	7 cut(s)	57, 63, 72, 102, 105, 124, 833
BspANI	GGCC	3 cut(s)	75, 133, 791
BspCNI	CTCAG	2 cut(s)	285, 616
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	96, 244, 245
BspQI	GCTCTTC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	76, 190, 693, 820
BssMI	GATC	2 cut(s)	138, 445
BssNI	GRCGYC	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	693, 820
Bst2UI	CCWGG	2 cut(s)	130, 192
Bst4CI	ACNGT	3 cut(s)	395, 498, 728
Bst6I	CTCTTC	1 cut(s)	711
BstACI	GRCGYC	1 cut(s)	483
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	387, 433
BstDEI	CTNAG	2 cut(s)	293, 624
BstDSI	CCRYGG	2 cut(s)	76, 693
BstF5I	GGATG	2 cut(s)	33, 186
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	128, 746
BstKTI	GATC	2 cut(s)	141, 448
BstMAI	GTCTC	3 cut(s)	302, 446, 620
BstMBI	GATC	2 cut(s)	138, 445
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 62, 78, 533, 647, 689, 718, 752
BstNI	CCWGG	2 cut(s)	130, 192
BstNSI	RCATGY	1 cut(s)	870
BstSCI	CCNGG	2 cut(s)	128, 190
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	695, 733
BstV2I	GAAGAC	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	75, 133, 791
BtgI	CCRYGG	2 cut(s)	76, 693
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	33, 186
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	3 cut(s)	114, 503, 975
Cac8I	GCNNGC	2 cut(s)	387, 433
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	2 cut(s)	128, 746
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	4 cut(s)	308, 437, 472, 818
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	6 cut(s)	142, 352, 473, 694, 741, 867
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	293, 624
DpnI	GATC	2 cut(s)	140, 447
DpnII	GATC	2 cut(s)	138, 445
EaeI	YGGCCR	2 cut(s)	73, 789
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	2 cut(s)	52, 848
Eco130I	CCWWGG	2 cut(s)	693, 820
Eco147I	AGGCCT	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	128, 190
EcoT14I	CCWWGG	2 cut(s)	693, 820
EcoT22I	ATGCAT	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	693, 820
FaeI	CATG	6 cut(s)	145, 355, 476, 697, 744, 870
FaqI	GGGAC	4 cut(s)	256, 286, 440, 714
FatI	CATG	6 cut(s)	141, 351, 472, 693, 740, 866
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	57, 73, 105, 684, 747
FokI	GGATG	2 cut(s)	20, 173
Fsp4HI	GCNGC	5 cut(s)	57, 73, 105, 684, 747
GlaI	GCGC	2 cut(s)	127, 745
GluI	GCNGC	5 cut(s)	57, 73, 105, 684, 747
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	2 cut(s)	213, 276
HaeIII	GGCC	3 cut(s)	75, 133, 791
HgaI	GACGC	4 cut(s)	308, 437, 472, 818
HhaI	GCGC	2 cut(s)	128, 746
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	145, 355, 476, 697, 744, 870
Hin6I	GCGC	2 cut(s)	126, 744
HinP1I	GCGC	2 cut(s)	126, 744
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	220, 454, 798
Hpy166II	GTNNAC	4 cut(s)	378, 548, 895, 943
Hpy188I	TCNGA	6 cut(s)	138, 179, 282, 294, 445, 504
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	4 cut(s)	378, 548, 895, 943
HpyAV	CCTTC	2 cut(s)	358, 742
HpyCH4III	ACNGT	3 cut(s)	395, 498, 728
HpyCH4V	TGCA	6 cut(s)	286, 611, 670, 683, 761, 848
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 62, 78, 533, 647, 689, 718, 752
HpyF3I	CTNAG	2 cut(s)	293, 624
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	6 cut(s)	145, 355, 476, 697, 744, 870
HspAI	GCGC	2 cut(s)	126, 744
KflI	GGGWCCC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 445
LguI	GCTCTTC	1 cut(s)	711
Lsp1109I	GCAGC	2 cut(s)	695, 733
LweI	GCATC	5 cut(s)	273, 500, 536, 628, 708
MaeIII	GTNAC	3 cut(s)	296, 484, 914
MalI	GATC	2 cut(s)	140, 447
MboI	GATC	2 cut(s)	138, 445
MboII	GAAGA	5 cut(s)	98, 163, 166, 202, 698
MfeI	CAATTG	1 cut(s)	612
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	4 cut(s)	612, 660, 699, 849
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	448
Mox20I	TGGCCA	1 cut(s)	791
Mph1103I	ATGCAT	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	81, 496
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	130, 192
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	130, 192
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	8 cut(s)	56, 62, 78, 533, 647, 689, 718, 752
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	2 cut(s)	138, 445
NlaIII	CATG	6 cut(s)	145, 355, 476, 697, 744, 870
NlaIV	GGNNCC	3 cut(s)	96, 244, 245
NmuCI	GTSAC	2 cut(s)	296, 484
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	870
PceI	AGGCCT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	220, 798
PflFI	GACNNNGTC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	904
PkrI	GCNGC	5 cut(s)	58, 74, 106, 685, 748
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	128, 190
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	128, 190
PspN4I	GGNNCC	3 cut(s)	96, 244, 245
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	938
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	81, 496
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	5 cut(s)	57, 73, 105, 684, 747
Sau3AI	GATC	2 cut(s)	138, 445
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	130, 192
SetI	ASST	7 cut(s)	33, 123, 637, 688, 826, 892, 997
SfaNI	GCATC	5 cut(s)	273, 500, 536, 628, 708
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	2 cut(s)	81, 496
SmlI	CTYRAG	2 cut(s)	449, 456
SmoI	CTYRAG	2 cut(s)	449, 456
Sse9I	AATT	4 cut(s)	612, 660, 699, 849
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	7 cut(s)	57, 63, 72, 102, 105, 124, 833
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	128, 190
StyI	CCWWGG	2 cut(s)	693, 820
TaaI	ACNGT	3 cut(s)	395, 498, 728
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	612, 660, 699, 849
TauI	GCSGC	3 cut(s)	59, 75, 107
TfiI	GAWTC	2 cut(s)	220, 798
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	121, 503, 975
TseFI	GTSAC	2 cut(s)	296, 484
TseI	GCWGC	2 cut(s)	683, 746
Tsp45I	GTSAC	2 cut(s)	296, 484
TspDTI	ATGAA	4 cut(s)	99, 175, 340, 489
TspRI	CASTG	3 cut(s)	121, 503, 975
Tth111I	GACNNNGTC	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.