Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007595

Physical Location & Seq

Genomic Coordinates Forward (+)

67261278 .. 67265626

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG482300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAATGGGCAATGAGGTTGCGAGTGGCTTTGTATCTTGCGCAAGCTTTGGAGTATTGCAGTAGTAGTGGGCAGGCATTGTACCATGATCTTAATGCTTATAGGGTTCTGTTTGATCAGGATGGAAATCCCAGGCTCTCCTGCTTTGGTCTGATGAAGAATAGCAAAGATGGAAAGAGTTATAGTACCAACCTGGCTTTCACCCCTCCAGAATACTTGAGGACAGGAAGAGTGATCCCAGAAAGTTTGGTTTACAGCTTTGGGACCCTATTGCTTGATCTGCTCAGTGGCAAACATATCCCCCCAAGCCATGCACTTGACCTGATACGCGGCAAAAACTTTTTAATGCTGATGGACTCATGCTTGGAAGGTCATTTCTCAAATGATGATGGAACTGAGCTGGTACGGTTAGCATCACGGTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCTCTTGTGACTGCCCTTATTCCTCTTCAAAAGGAAACAGAGCAGGTTCCATCATATGTTTTGCTTGGTATTCCGCACGGAGATGTGCCTGCAAATCAGACATCATTGTCACCTCTTGGTGACGCTTGCTCAAGATTAGATCTTACTGCCATACATGAAATCTTGGAGAAGGTTGCTTACAAGGATGACGAGGGGGTTGCAAATGATCTTTCTTTCCAAATGTGGACAAATCAAATACAAGAGACATTGAATTCCAAGAAACATGGGGATGCTGCATTTCGAGCAAAAGATTTTGCTACTGCCATAGATTCTTACACAGAATTCATTGATGGCGGGACCATGATATCTCCAACTGTGTTTGCTAGACGTTGTTTGTGCTATTTGATGAATGATATGGCACAAGAAGCTCTTGGAGATGCCATGCAAGCCCTAGTAATAAACCCTGAATGGCCGACTGCGTTCTACCTTCAAGCGGCTGCCTTAAAGAGCCTAGGCATGGACAACGATGCGCAGGAAACTCTAAAAGATGGCGCATCCTTGGAAGAAAAAAAAGATAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

340

Amino Acids

37.79

Weight (kDa)

5.16

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 159	5.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	11 - 156	3.2e-12	Protein kinase domain
TPR_BSK1_C	PF25575	194 - 311	6.3e-64	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59010 AT5G59010
fragaria_vesca	FvH4_3g37400 FvH4_3g37400 FvH4_3g37400
malus_domestica	MD03G1081000.v1.1
prunus_persica	Prupe.6G065400_v2.0.a1 Prupe.6G065400_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1 Prupe.6G065600_v2.0.a1
pyrus_communis	pycom11g07340
rosa_chinensis	RchiOBHm_Chr5g0067251
rosa_laevigata	RLG00000035919
rosa_multiflora	Rmu_sc0000015.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013880
rosa_rugosa	Rorug05G0383200 Rorug05G0383300
rosa_samantha	Rh5AG442800 Rh5BG459900 Rh5CG482300 Rh5DG474800
rosa_wichuraiana	Rw5G041370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
Acc16I	TGCGCA	2 cut(s)	42, 969
Acc36I	ACCTGC	1 cut(s)	493
AccII	CGCG	1 cut(s)	330
AciI	CCGC	4 cut(s)	330, 533, 792, 932
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	908
AcsI	RAATTY	2 cut(s)	709, 779
AfaI	GTAC	3 cut(s)	83, 187, 405
AfiI	CCNNNNNNNGG	2 cut(s)	931, 955
AgsI	TTSAA	3 cut(s)	488, 709, 929
AjnI	CCWGG	2 cut(s)	131, 192
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	47, 258, 400, 866
AluI	AGCT	4 cut(s)	47, 258, 400, 866
Alw26I	GTCTC	2 cut(s)	465, 695
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	2 cut(s)	446, 908
ApeKI	GCWGC	2 cut(s)	731, 935
ApoI	RAATTY	2 cut(s)	709, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspA2I	CCTAGG	1 cut(s)	949
AspLEI	GCGC	3 cut(s)	43, 970, 992
AspS9I	GGNCC	2 cut(s)	264, 795
AsuHPI	GGTGA	3 cut(s)	193, 561, 590
AvaII	GGWCC	2 cut(s)	264, 795
AvrII	CCTAGG	1 cut(s)	949
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BauI	CACGAG	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	718, 922
BccI	CCATC	7 cut(s)	116, 164, 346, 383, 517, 782, 980
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciT130I	CCWGG	2 cut(s)	133, 194
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	465, 695
BfaI	CTAG	3 cut(s)	822, 890, 950
BfuAI	ACCTGC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	4 cut(s)	331, 732, 933, 936
BlnI	CCTAGG	1 cut(s)	949
BlsI	GCNGC	4 cut(s)	332, 733, 934, 937
Bme1390I	CCNGG	2 cut(s)	133, 194
Bme18I	GGWCC	2 cut(s)	264, 795
BmgT120I	GGNCC	2 cut(s)	264, 795
BmiI	GGNNCC	4 cut(s)	265, 266, 507, 796
BmrFI	CCNGG	2 cut(s)	133, 194
BmsI	GCATC	5 cut(s)	422, 718, 865, 955, 1001
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	238, 574
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	131, 949, 996
Bsc4I	CCNNNNNNNGG	2 cut(s)	931, 955
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	133, 194
BseDI	CCNNGG	3 cut(s)	131, 949, 996
BseGI	GGATG	4 cut(s)	127, 649, 733, 992
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	931, 955
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	298, 387
BseXI	GCAGC	2 cut(s)	718, 922
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	448, 910
BslFI	GGGAC	2 cut(s)	277, 808
BslI	CCNNNNNNNGG	2 cut(s)	931, 955
BsmAI	GTCTC	2 cut(s)	465, 695
BsmFI	GGGAC	2 cut(s)	277, 808
BsnI	GGCC	2 cut(s)	448, 910
Bsp143I	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
BspACI	CCGC	4 cut(s)	330, 533, 792, 932
BspANI	GGCC	2 cut(s)	448, 910
BspCNI	CTCAG	2 cut(s)	297, 388
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	4 cut(s)	265, 266, 507, 796
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	131, 949, 996
BssMI	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	949, 996
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	133, 194
Bst4CI	ACNGT	3 cut(s)	408, 420, 814
Bst6I	CTCTTC	2 cut(s)	223, 489
BstC8I	GCNNGC	5 cut(s)	45, 75, 549, 586, 885
BstDEI	CTNAG	2 cut(s)	284, 396
BstF5I	GGATG	4 cut(s)	127, 649, 733, 992
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	43, 970, 992
BstKTI	GATC	6 cut(s)	91, 118, 237, 280, 601, 667
BstMAI	GTCTC	2 cut(s)	465, 695
BstMBI	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 740, 863, 884
BstNI	CCWGG	2 cut(s)	133, 194
BstSCI	CCNGG	2 cut(s)	131, 192
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	718, 922
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	448, 910
BtsCI	GGATG	4 cut(s)	127, 649, 733, 992
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	5 cut(s)	45, 75, 549, 586, 885
CfoI	GCGC	3 cut(s)	43, 970, 992
Cfr13I	GGNCC	2 cut(s)	264, 795
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	3 cut(s)	82, 186, 404
CviAII	CATG	8 cut(s)	86, 311, 360, 614, 722, 799, 880, 955
CviQI	GTAC	3 cut(s)	82, 186, 404
DdeI	CTNAG	2 cut(s)	284, 396
DpnI	GATC	6 cut(s)	90, 117, 236, 279, 600, 666
DpnII	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	908
Eam1104I	CTCTTC	2 cut(s)	223, 489
EarI	CTCTTC	2 cut(s)	223, 489
Eco130I	CCWWGG	2 cut(s)	949, 996
Eco32I	GATATC	1 cut(s)	804
Eco47I	GGWCC	2 cut(s)	264, 795
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRI	GAATTC	2 cut(s)	709, 779
EcoRII	CCWGG	2 cut(s)	131, 192
EcoRV	GATATC	1 cut(s)	804
EcoT14I	CCWWGG	2 cut(s)	949, 996
ErhI	CCWWGG	2 cut(s)	949, 996
FaeI	CATG	8 cut(s)	89, 314, 363, 617, 725, 802, 883, 958
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	2 cut(s)	277, 808
FatI	CATG	8 cut(s)	85, 310, 359, 613, 721, 798, 879, 954
FauI	CCCGC	1 cut(s)	785
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	331, 732, 933, 936
FokI	GGATG	4 cut(s)	134, 656, 740, 979
Fsp4HI	GCNGC	4 cut(s)	331, 732, 933, 936
FspBI	CTAG	3 cut(s)	822, 890, 950
FspI	TGCGCA	2 cut(s)	42, 969
GlaI	GCGC	3 cut(s)	42, 969, 991
GluI	GCNGC	4 cut(s)	331, 732, 933, 936
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	448, 910
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	3 cut(s)	43, 970, 992
Hin1II	CATG	8 cut(s)	89, 314, 363, 617, 725, 802, 883, 958
Hin6I	GCGC	3 cut(s)	41, 968, 990
HinP1I	GCGC	3 cut(s)	41, 968, 990
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	2 cut(s)	356, 767
HphI	GGTGA	3 cut(s)	193, 561, 590
Hpy166II	GTNNAC	2 cut(s)	253, 684
Hpy188I	TCNGA	2 cut(s)	153, 558
Hpy188III	TCNNGA	4 cut(s)	119, 209, 440, 591
Hpy8I	GTNNAC	2 cut(s)	253, 684
HpyAV	CCTTC	3 cut(s)	362, 622, 935
HpyCH4III	ACNGT	3 cut(s)	408, 420, 814
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	7 cut(s)	60, 314, 427, 551, 659, 734, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 740, 863, 884
HpyF3I	CTNAG	2 cut(s)	284, 396
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	8 cut(s)	89, 314, 363, 617, 725, 802, 883, 958
HspAI	GCGC	3 cut(s)	41, 968, 990
KflI	GGGWCCC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
Lsp1109I	GCAGC	2 cut(s)	718, 922
LweI	GCATC	5 cut(s)	422, 718, 865, 955, 1001
MaeI	CTAG	3 cut(s)	822, 890, 950
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	3 cut(s)	466, 567, 578
MalI	GATC	6 cut(s)	90, 117, 236, 279, 600, 666
MboI	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
MboII	GAAGA	4 cut(s)	169, 240, 476, 1013
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	2 cut(s)	709, 779
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	833
MnlI	CCTC	8 cut(s)	9, 213, 216, 438, 447, 492, 582, 643
MseI	TTAA	3 cut(s)	93, 344, 941
MslI	CAYNNNNRTG	3 cut(s)	418, 540, 726
MspR9I	CCNGG	2 cut(s)	133, 194
MvaI	CCWGG	2 cut(s)	133, 194
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	280, 740, 863, 884
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
NlaIII	CATG	8 cut(s)	89, 314, 363, 617, 725, 802, 883, 958
NlaIV	GGNNCC	4 cut(s)	265, 266, 507, 796
NmuCI	GTSAC	3 cut(s)	466, 567, 578
NsbI	TGCGCA	2 cut(s)	42, 969
PfeI	GAWTC	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	332, 733, 934, 937
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	131, 192
PspGI	CCWGG	2 cut(s)	131, 192
PspN4I	GGNNCC	4 cut(s)	265, 266, 507, 796
PspPI	GGNCC	2 cut(s)	264, 795
PspPPI	RGGWCCY	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	3 cut(s)	83, 187, 405
RsaNI	GTAC	3 cut(s)	82, 186, 404
RseI	CAYNNNNRTG	3 cut(s)	418, 540, 726
SaqAI	TTAA	3 cut(s)	93, 344, 941
SatI	GCNGC	4 cut(s)	331, 732, 933, 936
Sau3AI	GATC	6 cut(s)	88, 115, 234, 277, 598, 664
Sau96I	GGNCC	2 cut(s)	264, 795
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	133, 194
SfaNI	GCATC	5 cut(s)	422, 718, 865, 955, 1001
SinI	GGWCC	2 cut(s)	264, 795
SmiMI	CAYNNNNRTG	3 cut(s)	418, 540, 726
SmlI	CTYRAG	2 cut(s)	217, 589
SmoI	CTYRAG	2 cut(s)	217, 589
Sse9I	AATT	2 cut(s)	709, 779
SsiI	CCGC	4 cut(s)	330, 533, 792, 932
SspMI	CTAG	3 cut(s)	822, 890, 950
StyD4I	CCNGG	2 cut(s)	131, 192
StyI	CCWWGG	2 cut(s)	949, 996
TaaI	ACNGT	3 cut(s)	408, 420, 814
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	1 cut(s)	739
TasI	AATT	2 cut(s)	709, 779
TauI	GCSGC	2 cut(s)	333, 935
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	3 cut(s)	93, 344, 941
Tru9I	TTAA	3 cut(s)	93, 344, 941
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	3 cut(s)	466, 567, 578
TseI	GCWGC	2 cut(s)	731, 935
Tsp45I	GTSAC	3 cut(s)	466, 567, 578
TspDTI	ATGAA	6 cut(s)	17, 170, 447, 630, 772, 860
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	264, 795
XapI	RAATTY	2 cut(s)	709, 779
XmaJI	CCTAGG	1 cut(s)	949
XspI	CTAG	3 cut(s)	822, 890, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.