Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Reverse (-)

8715061 .. 8715937

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTTGTCTCTCCATGTGCGAATTTTGGCCGTGGTGAACTACTTTTGGTGTATGACTACATGCCTAATGGTAGTTTGGATAAGTACCTCTACAACCAACCGAATGTGACTCTTAACTGGAGTCAGAGGTTTAGAGTCATCAAAGGTGTGGCTTCAGGGTTGTTCTATCTTCATGAAGAATGGGAACATGTAGTGATTCACAGAGATGTGAAGGCCAGTAATGTGCTACTAGACAAGGATTTCAATGGAAGATTAGGAGATTTTGGACTTGCAAGATTATGTGACCGTGGAATAGACCCTCAAACTACTCATGTAGCTGGCACACTTGGGTATATAGCCCCAGAGCATGCAAGAACCGGCCGTGCCACCGCGAGCACAGATGTGTTTTCTTTCGGGGCATTTTTGCTCGAAGTTACCTGTGGAAGAAGGCCAATAGAGAGACAAGGACCAAAGGACGATATCGTTTTGGTTGATCGGGTTTTTGTGTGTTGGAATAGAGGTAATATTCTAGAGGCAAGAGATCAAAAATTGAGTAACGATTTTGTAGTTGGGGAAGTGGAATTGGTGTTGAAGCTTGCATTATTGTGCTCTTGTTCGGAGCCTGCAGCCAGGCCAAGCATGCGACAAGTGATGCAGTATTTGGAGGGTGATATTGCTCTCCCGGAGTTGTCACTCCTTCGGCTCTCTCCGAGTGGTTTAGTATTTGTGCATGATGAAGGTCCTGATGATGTTCAAATGGTGTATCAGTGTTCATATGTTCCCGAGTCGACTCTCCTCTCAGGTGGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

263

Amino Acids

29.37

Weight (kDa)

5.4

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	11 - 213	4.3e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 212	6.1e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	1 cut(s)	371
AciI	CCGC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	28, 358
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	244, 571, 734
AjnI	CCWGG	1 cut(s)	608
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	317, 574
AluI	AGCT	2 cut(s)	317, 574
Alw21I	GWGCWC	2 cut(s)	377, 590
Alw26I	GTCTC	2 cut(s)	13, 433
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	5 cut(s)	28, 213, 358, 428, 611
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	446, 719
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	47, 659
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	446, 719
Bbv12I	GWGCWC	2 cut(s)	377, 590
BbvI	GCAGC	1 cut(s)	617
BceAI	ACGGC	2 cut(s)	15, 345
BciT130I	CCWGG	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	13, 433
BfaI	CTAG	2 cut(s)	230, 509
BfmI	CTRYAG	1 cut(s)	603
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	610, 662
Bme18I	GGWCC	2 cut(s)	446, 719
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	446, 719
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	610, 662
BmsI	GCATC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	31, 286
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	122, 216
BseBI	CCWGG	1 cut(s)	610
BseDI	CCNNGG	2 cut(s)	31, 286
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	2 cut(s)	122, 216
BseRI	GAGGAG	1 cut(s)	764
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	5 cut(s)	30, 215, 360, 430, 613
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	377, 590
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	2 cut(s)	357, 662
BsmAI	GTCTC	2 cut(s)	13, 433
BsnI	GGCC	5 cut(s)	30, 215, 360, 430, 613
BsoBI	CYCGRG	1 cut(s)	761
Bsp1286I	GDGCHC	2 cut(s)	377, 590
Bsp143I	GATC	2 cut(s)	472, 520
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	5 cut(s)	30, 215, 360, 430, 613
BspCNI	CTCAG	1 cut(s)	791
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	122, 216
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	31, 286
BssMI	GATC	2 cut(s)	472, 520
Bst2UI	CCWGG	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	6 cut(s)	319, 348, 373, 576, 603, 620
BstDEI	CTNAG	1 cut(s)	778
BstDSI	CCRYGG	2 cut(s)	31, 286
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	2 cut(s)	475, 523
BstMAI	GTCTC	2 cut(s)	13, 433
BstMBI	GATC	2 cut(s)	472, 520
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	610
BstNSI	RCATGY	4 cut(s)	64, 191, 350, 622
BstSCI	CCNGG	2 cut(s)	608, 660
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	617
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	5 cut(s)	30, 215, 360, 430, 613
BtgI	CCRYGG	2 cut(s)	31, 286
BtsIMutI	CAGTG	1 cut(s)	752
Cac8I	GCNNGC	6 cut(s)	319, 348, 373, 576, 603, 620
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	446, 719
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	8 cut(s)	15, 61, 173, 188, 311, 347, 619, 710
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	778
DpnI	GATC	2 cut(s)	474, 522
DpnII	GATC	2 cut(s)	472, 520
EaeI	YGGCCR	2 cut(s)	28, 358
EagI	CGGCCG	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	446, 719
Eco52I	CGGCCG	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	761
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	608
EcoRV	GATATC	1 cut(s)	460
FaeI	CATG	8 cut(s)	18, 64, 176, 191, 314, 350, 622, 713
FatI	CATG	8 cut(s)	14, 60, 172, 187, 310, 346, 618, 709
FauNDI	CATATG	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	1 cut(s)	606
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	230, 509
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	5 cut(s)	30, 215, 360, 430, 613
HapII	CCGG	2 cut(s)	357, 662
Hin1II	CATG	8 cut(s)	18, 64, 176, 191, 314, 350, 622, 713
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	6 cut(s)	109, 121, 135, 196, 764, 769
HpaII	CCGG	2 cut(s)	357, 662
HphI	GGTGA	2 cut(s)	47, 659
Hpy166II	GTNNAC	2 cut(s)	38, 768
Hpy188I	TCNGA	3 cut(s)	126, 598, 690
Hpy188III	TCNNGA	4 cut(s)	173, 509, 722, 761
Hpy8I	GTNNAC	2 cut(s)	38, 768
HpyAV	CCTTC	4 cut(s)	205, 420, 686, 710
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	6 cut(s)	272, 350, 578, 605, 634, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	1 cut(s)	778
Hsp92II	CATG	8 cut(s)	18, 64, 176, 191, 314, 350, 622, 713
Kzo9I	GATC	2 cut(s)	472, 520
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	2 cut(s)	230, 509
MaeIII	GTNAC	5 cut(s)	106, 281, 412, 533, 669
MalI	GATC	2 cut(s)	474, 522
MboI	GATC	2 cut(s)	472, 520
MboII	GAAGA	4 cut(s)	161, 188, 261, 435
MhlI	GDGCHC	2 cut(s)	377, 590
MluCI	AATT	3 cut(s)	22, 527, 560
MlyI	GAGTC	5 cut(s)	103, 130, 144, 763, 773
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	7 cut(s)	98, 120, 309, 491, 505, 637, 785
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	3 cut(s)	204, 380, 583
MspI	CCGG	2 cut(s)	357, 662
MspR9I	CCNGG	2 cut(s)	610, 662
MvaI	CCWGG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	619
NciI	CCSGG	1 cut(s)	662
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	472, 520
NlaIII	CATG	8 cut(s)	18, 64, 176, 191, 314, 350, 622, 713
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	3 cut(s)	106, 281, 669
NspI	RCATGY	4 cut(s)	64, 191, 350, 622
OliI	CACNNNNGTG	1 cut(s)	380
PaeI	GCATGC	2 cut(s)	350, 622
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	5 cut(s)	103, 129, 143, 763, 772
PpsI	GAGTC	5 cut(s)	103, 129, 143, 763, 772
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	446, 719
PspPPI	RGGWCCY	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	3 cut(s)	204, 380, 583
SalI	GTCGAC	1 cut(s)	766
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	472, 520
Sau96I	GGNCC	2 cut(s)	446, 719
SchI	GAGTC	5 cut(s)	103, 130, 144, 763, 773
ScrFI	CCNGG	2 cut(s)	610, 662
SduI	GDGCHC	2 cut(s)	377, 590
SetI	ASST	9 cut(s)	90, 131, 148, 319, 419, 502, 576, 721, 784
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	2 cut(s)	446, 719
SmiMI	CAYNNNNRTG	3 cut(s)	204, 380, 583
SphI	GCATGC	2 cut(s)	350, 622
Sse9I	AATT	3 cut(s)	22, 527, 560
SsiI	CCGC	1 cut(s)	369
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	230, 509
StyD4I	CCNGG	2 cut(s)	608, 660
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	408, 767
TasI	AATT	3 cut(s)	22, 527, 560
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	752
TseFI	GTSAC	3 cut(s)	106, 281, 669
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	3 cut(s)	106, 281, 669
TspDTI	ATGAA	4 cut(s)	161, 189, 729, 741
TspRI	CASTG	1 cut(s)	752
VpaK11BI	GGWCC	2 cut(s)	446, 719
XapI	RAATTY	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	4 cut(s)	64, 191, 350, 622
XmiI	GTMKAC	1 cut(s)	767
XspI	CTAG	2 cut(s)	230, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.