Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Forward (+)

12066725 .. 12067836

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAGGAATTTGTAGCAGAAATTGTTAGCCTTGGCCGGCTTCGTCACCGGAATTTAGTACAACTCTTGGGCTATTGCAGGCGAAATGGTGAACTACTTTTGGTGTATGACTACATGCCTAATGGTAGCTTGGAAAAGTACCTCTACAACCAACCGAAGATTACTCTAAACTGGAGTCAGAGGTTTAGAGTAATCAAAGGTGTGGCTTCAGGATTGTTTTATCTTCATGAAGGGTGGGAACAAGTAGTAATTCACAGAGATGTGAAGGCTAGTAATGTGCTACTAGACCAGGAATTGAATGGAAGACTGGGAGATTTTGGACTTGCAAGATTATGTGCCCATGGGACAGACCCTCAAGCTACTCATGTAGCTGGCACACTTGGGTATTTAGCCCCGGAGCATGCAAGAACTGGTCGGGTCACCATGAGCACAGATGTGTTTGCTTACGGGATATTTTTGCTCGAAGTTGCCTGTGGAAGAAGGCCGATAGAGACACAAAGACCGGAGGAGGATATCGTTCTGGTTGATCGGGTTTTTTCGTGTTGGAATAGAGGTAATATTCTAGAGGCAAGAGATCAAAACTTGGGTAACGATTTTGTAGTTGAGGAAGTGGAATTGGTGTTGAAGCTTGCATTGTTGTGCACTCGTTTGCAGCCTGCAGCCAGGCCAAGCATGCGAGAAGTGATGCAGTATTTGAAAGGTGATATTGATCTCCCAGATTTGTCATTTCTTCGGCCCTCTTTGAGTGGTTTAGCATTTGCGCATGATGAAGGTTCAGATGATGTTGAAATGGCGTATCAGTGTTCATATGTTCCAGAGTCGACCCTCCTCTCCGGTGGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

281

Amino Acids

31.69

Weight (kDa)

5.69

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 231	1.8e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 230	1.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	762
AccI	GTMKAC	1 cut(s)	821
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	8, 52
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	2 cut(s)	60, 140
AgsI	TTSAA	4 cut(s)	298, 625, 697, 788
AjnI	CCWGG	2 cut(s)	288, 662
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	129, 359, 371, 628
AluI	AGCT	4 cut(s)	129, 359, 371, 628
Alw21I	GWGCWC	2 cut(s)	431, 644
Alw26I	GTCTC	1 cut(s)	485
Alw44I	GTGCAC	1 cut(s)	640
AoxI	GGCC	4 cut(s)	34, 482, 665, 734
ApaLI	GTGCAC	1 cut(s)	640
ApeKI	GCWGC	2 cut(s)	652, 659
ApoI	RAATTY	2 cut(s)	8, 52
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	38, 101, 412, 713
BaeGI	GKGCMC	2 cut(s)	340, 644
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	2 cut(s)	431, 644
BbvI	GCAGC	2 cut(s)	664, 671
BciT130I	CCWGG	2 cut(s)	290, 664
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	3 cut(s)	270, 284, 563
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	2 cut(s)	653, 660
BlsI	GCNGC	2 cut(s)	654, 661
Bme1390I	CCNGG	3 cut(s)	290, 395, 664
BmgT120I	GGNCC	1 cut(s)	735
BmrFI	CCNGG	3 cut(s)	290, 395, 664
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	675
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	3 cut(s)	31, 340, 393
BsaWI	WCCGGW	3 cut(s)	48, 502, 833
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	3 cut(s)	176, 312, 415
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	290, 664
BseDI	CCNNGG	3 cut(s)	31, 340, 393
BseJI	GATNNNNATC	1 cut(s)	708
BseNI	ACTGG	3 cut(s)	176, 312, 415
BseRI	GAGGAG	2 cut(s)	521, 818
BseSI	GKGCMC	2 cut(s)	340, 644
BseXI	GCAGC	2 cut(s)	664, 671
BshFI	GGCC	4 cut(s)	36, 484, 667, 736
BsiHKAI	GWGCWC	2 cut(s)	431, 644
BsiSI	CCGG	5 cut(s)	37, 49, 395, 503, 834
BslFI	GGGAC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	36, 484, 667, 736
Bsp1286I	GDGCHC	3 cut(s)	340, 431, 644
Bsp143I	GATC	3 cut(s)	526, 574, 709
Bsp19I	CCATGG	1 cut(s)	340
BspANI	GGCC	4 cut(s)	36, 484, 667, 736
BspHI	TCATGA	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	176, 312, 415
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	31, 340, 393
BssMI	GATC	3 cut(s)	526, 574, 709
BssT1I	CCWWGG	2 cut(s)	31, 340
Bst2UI	CCWGG	2 cut(s)	290, 664
BstC8I	GCNNGC	7 cut(s)	38, 80, 373, 402, 630, 657, 674
BstDSI	CCRYGG	1 cut(s)	340
BstEII	GGTNACC	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	3 cut(s)	529, 577, 712
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	3 cut(s)	526, 574, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	2 cut(s)	290, 664
BstNSI	RCATGY	3 cut(s)	118, 404, 676
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	288, 393, 662
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	2 cut(s)	340, 644
BstV1I	GCAGC	2 cut(s)	664, 671
BstV2I	GAAGAC	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	36, 484, 667, 736
BtgI	CCRYGG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	806
Cac8I	GCNNGC	7 cut(s)	38, 80, 373, 402, 630, 657, 674
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	59, 139
CviAII	CATG	8 cut(s)	115, 227, 341, 365, 401, 424, 673, 764
CviQI	GTAC	2 cut(s)	59, 139
DpnI	GATC	3 cut(s)	528, 576, 711
DpnII	GATC	3 cut(s)	526, 574, 709
EaeI	YGGCCR	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	31, 340
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	288, 662
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	31, 340
ErhI	CCWWGG	2 cut(s)	31, 340
FaeI	CATG	8 cut(s)	118, 230, 344, 368, 404, 427, 676, 767
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	8 cut(s)	114, 226, 340, 364, 400, 423, 672, 763
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	2 cut(s)	653, 660
Fsp4HI	GCNGC	2 cut(s)	653, 660
FspBI	CTAG	3 cut(s)	270, 284, 563
FspI	TGCGCA	1 cut(s)	762
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	2 cut(s)	653, 660
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	36, 484, 667, 736
HapII	CCGG	5 cut(s)	37, 49, 395, 503, 834
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	8 cut(s)	118, 230, 344, 368, 404, 427, 676, 767
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	2 cut(s)	175, 818
HpaII	CCGG	5 cut(s)	37, 49, 395, 503, 834
HphI	GGTGA	4 cut(s)	38, 101, 412, 713
Hpy166II	GTNNAC	3 cut(s)	92, 642, 822
Hpy188I	TCNGA	2 cut(s)	180, 778
Hpy188III	TCNNGA	4 cut(s)	210, 227, 563, 815
Hpy8I	GTNNAC	3 cut(s)	92, 642, 822
HpyAV	CCTTC	4 cut(s)	224, 259, 474, 764
HpyCH4V	TGCA	8 cut(s)	78, 326, 404, 632, 642, 652, 659, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
Hsp92II	CATG	8 cut(s)	118, 230, 344, 368, 404, 427, 676, 767
HspAI	GCGC	1 cut(s)	761
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	526, 574, 709
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	2 cut(s)	664, 671
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	3 cut(s)	270, 284, 563
MaeIII	GTNAC	3 cut(s)	44, 418, 587
MalI	GATC	3 cut(s)	528, 576, 711
MboI	GATC	3 cut(s)	526, 574, 709
MboII	GAAGA	5 cut(s)	169, 215, 315, 489, 722
MhlI	GDGCHC	3 cut(s)	340, 431, 644
MluCI	AATT	6 cut(s)	8, 21, 52, 249, 293, 614
MlyI	GAGTC	2 cut(s)	184, 827
MmeI	TCCRAC	1 cut(s)	524
MroNI	GCCGGC	1 cut(s)	36
MslI	CAYNNNNRTG	3 cut(s)	258, 434, 637
MspI	CCGG	5 cut(s)	37, 49, 395, 503, 834
MspR9I	CCNGG	3 cut(s)	290, 395, 664
MvaI	CCWGG	2 cut(s)	290, 664
MwoI	GCNNNNNNNGC	1 cut(s)	673
NaeI	GCCGGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	3 cut(s)	526, 574, 709
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	8 cut(s)	118, 230, 344, 368, 404, 427, 676, 767
NmuCI	GTSAC	2 cut(s)	44, 418
NsbI	TGCGCA	1 cut(s)	762
NspI	RCATGY	3 cut(s)	118, 404, 676
OliI	CACNNNNGTG	1 cut(s)	434
PaeI	GCATGC	2 cut(s)	404, 676
PagI	TCATGA	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	654, 661
PleI	GAGTC	2 cut(s)	183, 826
PpsI	GAGTC	2 cut(s)	183, 826
Psp6I	CCWGG	2 cut(s)	288, 662
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	2 cut(s)	288, 662
PspPI	GGNCC	1 cut(s)	735
PstI	CTGCAG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	60, 140
RsaNI	GTAC	2 cut(s)	59, 139
RseI	CAYNNNNRTG	3 cut(s)	258, 434, 637
SalI	GTCGAC	1 cut(s)	820
SatI	GCNGC	2 cut(s)	653, 660
Sau3AI	GATC	3 cut(s)	526, 574, 709
Sau96I	GGNCC	1 cut(s)	735
SchI	GAGTC	2 cut(s)	184, 827
ScrFI	CCNGG	3 cut(s)	290, 395, 664
SduI	GDGCHC	3 cut(s)	340, 431, 644
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	3 cut(s)	258, 434, 637
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SphI	GCATGC	2 cut(s)	404, 676
Sse9I	AATT	6 cut(s)	8, 21, 52, 249, 293, 614
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	270, 284, 563
StyD4I	CCNGG	3 cut(s)	288, 393, 662
StyI	CCWWGG	2 cut(s)	31, 340
TaqI	TCGA	2 cut(s)	462, 821
TasI	AATT	6 cut(s)	8, 21, 52, 249, 293, 614
TatI	WGTACW	1 cut(s)	58
TscAI	CASTG	1 cut(s)	806
TseFI	GTSAC	2 cut(s)	44, 418
TseI	GCWGC	2 cut(s)	652, 659
Tsp45I	GTSAC	2 cut(s)	44, 418
TspDTI	ATGAA	5 cut(s)	17, 215, 243, 783, 795
TspRI	CASTG	1 cut(s)	806
VneI	GTGCAC	1 cut(s)	640
XapI	RAATTY	2 cut(s)	8, 52
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	3 cut(s)	118, 404, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	821
XspI	CTAG	3 cut(s)	270, 284, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.