Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020980.1

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Reverse (-)

1561 .. 2292

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcctaatggtagtttggataagtacctctacaaccaaccgaatgtgactcttaattggagtcagaggtttagagtcatcaaaggtgtggcttcagggttgttctatcttcatgaagaatgggaacaagtagtgattcacagagatgtgaaggccagtaatgtgctactagacaaggatttcaatggaagactaggagattttggacttgcaagattatgtgaccgtggaacagaccctcaaactactcatgtagctggcacacttgggtatatagccccagagcatgcaagaaccggccgtgccaccacgagcacagatgtgttttctttcggggcatttttgctcgaagttgtctgtggaagaaggccaatagagagacaaggaccagaggtcgatatctttttggttgatagggttttttcgtgttggaatagaggtaatattctagaggcaagagatcaaaaattgagtaatgactttgtagttggggaagtggaattggtgttgaaacttgcattattatgctcttgttcgcagcctgcaaccaggccaagcatgcgacaagtgatgcagtatttggagggtgatattgctatcccggagttgtcacttcttcagctctcttcgagtggtttagtatttgtgcctgatgaaggtcctgatgatgttgaaatggtgtatcagtgttcatatgttcccgagtcgactctcctctcaggtggtcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

27.07

Weight (kDa)

5.06

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	78, 602
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	184, 511, 674
AhdI	GACNNNNNGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	257, 622
AluI	AGCT	2 cut(s)	257, 622
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	4 cut(s)	153, 298, 368, 551
ApeKI	GCWGC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	386, 659
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	386, 659
BauI	CACGAG	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	170, 194, 449
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	2 cut(s)	550, 602
Bme18I	GGWCC	2 cut(s)	386, 659
BmeRI	GACNNNNNGTC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	386, 659
BmrFI	CCNGG	2 cut(s)	550, 602
BmsI	GCATC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	704
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	550
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	4 cut(s)	155, 300, 370, 553
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	297, 602
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	155, 300, 370, 553
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	460
BspANI	GGCC	4 cut(s)	155, 300, 370, 553
BspCNI	CTCAG	1 cut(s)	731
BspHI	TCATGA	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	460
BssSI	CACGAG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	631
BstC8I	GCNNGC	4 cut(s)	259, 288, 543, 560
BstDEI	CTNAG	1 cut(s)	718
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	460
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	2 cut(s)	290, 562
BstSCI	CCNGG	2 cut(s)	548, 600
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	4 cut(s)	155, 300, 370, 553
BtgI	CCRYGG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	4 cut(s)	259, 288, 543, 560
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	386, 659
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	113, 251, 287, 559
CviJI	RGCY	9 cut(s)	92, 155, 257, 278, 300, 370, 541, 553, 622
CviKI_1	RGCY	9 cut(s)	92, 155, 257, 278, 300, 370, 541, 553, 622
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	718
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DriI	GACNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	631
EclXI	CGGCCG	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	386, 659
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	78, 602
Eco88I	CYCGRG	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	400
FaeI	CATG	4 cut(s)	116, 254, 290, 562
FatI	CATG	4 cut(s)	112, 250, 286, 558
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	3 cut(s)	170, 194, 449
GluI	GCNGC	1 cut(s)	539
HaeIII	GGCC	4 cut(s)	155, 300, 370, 553
HapII	CCGG	2 cut(s)	297, 602
Hin1II	CATG	4 cut(s)	116, 254, 290, 562
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	6 cut(s)	49, 61, 75, 136, 704, 709
HpaII	CCGG	2 cut(s)	297, 602
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	113, 449, 662, 701
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	3 cut(s)	145, 360, 650
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	212, 290, 518, 545, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	1 cut(s)	718
Hsp92II	CATG	4 cut(s)	116, 254, 290, 562
Kzo9I	GATC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	3 cut(s)	170, 194, 449
MaeIII	GTNAC	3 cut(s)	46, 221, 609
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	6 cut(s)	101, 128, 201, 375, 608, 618
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	3 cut(s)	55, 467, 500
MlyI	GAGTC	5 cut(s)	43, 70, 84, 703, 713
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	38, 60, 249, 385, 431, 445, 577, 725
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	3 cut(s)	144, 320, 523
MspI	CCGG	2 cut(s)	297, 602
MspR9I	CCNGG	2 cut(s)	550, 602
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	559
NciI	CCSGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	4 cut(s)	116, 254, 290, 562
NmuCI	GTSAC	3 cut(s)	46, 221, 609
NspI	RCATGY	2 cut(s)	290, 562
OliI	CACNNNNGTG	1 cut(s)	320
PaeI	GCATGC	2 cut(s)	290, 562
PagI	TCATGA	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	5 cut(s)	43, 69, 83, 703, 712
PpsI	GAGTC	5 cut(s)	43, 69, 83, 703, 712
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspPI	GGNCC	2 cut(s)	386, 659
PspPPI	RGGWCCY	1 cut(s)	659
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	3 cut(s)	144, 320, 523
SalI	GTCGAC	1 cut(s)	706
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	2 cut(s)	386, 659
SchI	GAGTC	5 cut(s)	43, 70, 84, 703, 713
ScrFI	CCNGG	2 cut(s)	550, 602
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	30, 71, 88, 259, 396, 442, 624, 661, 724
SfaNI	GCATC	1 cut(s)	561
SinI	GGWCC	2 cut(s)	386, 659
SmiMI	CAYNNNNRTG	3 cut(s)	144, 320, 523
SphI	GCATGC	2 cut(s)	290, 562
Sse9I	AATT	3 cut(s)	55, 467, 500
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	170, 194, 449
StyD4I	CCNGG	2 cut(s)	548, 600
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	348, 396, 629, 707
TasI	AATT	3 cut(s)	55, 467, 500
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	3 cut(s)	46, 221, 609
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	3 cut(s)	46, 221, 609
TspDTI	ATGAA	4 cut(s)	101, 129, 669, 681
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	386, 659
XagI	CCTNNNNNAGG	1 cut(s)	654
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	2 cut(s)	290, 562
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	3 cut(s)	170, 194, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.