Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7977474.1

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 475

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7977474.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ctgttctatcttcatgaagaatgggaacaggttgtgattcatagggatgtgaaggccagtaatgtgttggtagatggggaattgaatggaaagctaggagatttcgggcttgcaagattatacgaccatggaacagaccctcaaacaactcatatagttggaacactagggtacctagccccagagcacacaagaacaggttgggccaccacgagcaccgacgtgtttgcttttggggcatttttgctcgaagttgcttgcggaaaaaggcctattgagagacaaggtccagaagctgagattttgcttgattgggtattttcttgttggaatagaagtaacatccttgaggcaagagatcaaaggtttggtacggattttgtagccgaggaattggagttggtgttgaagcttgggcttttgtgctctcattcggagccagcggcaaggccaagcatgcgacaagtcgttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.75

Weight (kDa)

5.05

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	171
AciI	CCGC	2 cut(s)	261, 443
AfaI	GTAC	2 cut(s)	173, 373
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	85, 409
AjiI	CACGTC	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	94, 296, 412
AluI	AGCT	3 cut(s)	94, 296, 412
Alw21I	GWGCWC	3 cut(s)	189, 218, 428
Alw26I	GTCTC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	4 cut(s)	54, 204, 269, 449
Asp718I	GGTACC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	204, 287
AvaII	GGWCC	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	155, 188
BanI	GGYRCC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	211
Bbv12I	GWGCWC	3 cut(s)	189, 218, 428
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	95, 167, 176
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	204, 287
BmiI	GGNNCC	2 cut(s)	173, 438
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	127, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	127, 387
BseGI	GGATG	2 cut(s)	52, 342
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	56, 206, 271, 451
BshNI	GGYRCC	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	189, 218, 428
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	4 cut(s)	56, 206, 271, 451
Bsp1286I	GDGCHC	3 cut(s)	189, 218, 428
Bsp143I	GATC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	2 cut(s)	261, 443
BspANI	GGCC	4 cut(s)	56, 206, 271, 451
BspCNI	CTCAG	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	173, 438
BspT107I	GGYRCC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	127, 387
BssMI	GATC	1 cut(s)	358
BssSI	CACGAG	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	211
BstC8I	GCNNGC	4 cut(s)	111, 259, 441, 458
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	52, 342
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 457
BstNSI	RCATGY	1 cut(s)	460
BsuRI	GGCC	4 cut(s)	56, 206, 271, 451
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	52, 342
Cac8I	GCNNGC	4 cut(s)	111, 259, 441, 458
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	204, 287
Csp6I	GTAC	2 cut(s)	172, 372
CviAII	CATG	3 cut(s)	14, 128, 457
CviQI	GTAC	2 cut(s)	172, 372
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	17, 131, 460
FaiI	YATR	7 cut(s)	15, 42, 121, 129, 153, 155, 458
FatI	CATG	3 cut(s)	13, 127, 456
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	59, 329
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	95, 167, 176
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	4 cut(s)	56, 206, 271, 451
Hin1II	CATG	3 cut(s)	17, 131, 460
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	2 cut(s)	14, 290
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 457
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	17, 131, 460
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	6 cut(s)	14, 70, 183, 195, 303, 453
MaeI	CTAG	3 cut(s)	95, 167, 176
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	3 cut(s)	189, 218, 428
MluCI	AATT	2 cut(s)	80, 392
MmeI	TCCRAC	2 cut(s)	139, 308
MnlI	CCTC	3 cut(s)	150, 343, 382
MslI	CAYNNNNRTG	2 cut(s)	45, 221
MspA1I	CMGCKG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	236, 457
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	3 cut(s)	17, 131, 460
NlaIV	GGNNCC	2 cut(s)	173, 438
NmeAIII	GCCGAG	1 cut(s)	412
NspI	RCATGY	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	460
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	173, 438
PspPI	GGNCC	2 cut(s)	204, 287
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	285
RsaI	GTAC	2 cut(s)	173, 373
RsaNI	GTAC	2 cut(s)	172, 372
RseI	CAYNNNNRTG	2 cut(s)	45, 221
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	204, 287
SduI	GDGCHC	3 cut(s)	189, 218, 428
SetI	ASST	9 cut(s)	33, 96, 177, 202, 225, 289, 298, 368, 414
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	45, 221
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	460
Sse9I	AATT	2 cut(s)	80, 392
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	2 cut(s)	261, 443
SspMI	CTAG	3 cut(s)	95, 167, 176
StuI	AGGCCT	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	80, 392
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	29, 30
TspGWI	ACGGA	1 cut(s)	389
Tth111I	GACNNNGTC	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	3 cut(s)	95, 167, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.