Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000362.1

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Forward (+)

32916 .. 34693

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000362.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atgcctaatggtagtttggataagtacctctacaaccaaccgaatgtgactcttaattggagtaagaggtttagagtcatcaaaggtgtggcttcagggttgttctatcttcatgaagaatgggaacaagtagtgattcacagagatgtgaaggccagtaatgtgctactagacaaggatttcaatggaagactaggagattttggacttgcaagattatgtgaccgtggaacagaccctcaaactactcatgtagctggcacacttgggtatatagccccagagcatgcaagaaccggccgtgccaccacgagcacagatgtgttttctttcggggcatttttgctcgaagttgtctgtggaagaaggccaatagagagacaaggaccagaggtcgatatctttttggttgatagggttttttcgtgttggaatagaggtaatattctagaggcaagagatcaaaaattgagtaatgactttgtagttggggaagtggaattggtgttgaaacttgcattattatgctcttgttcgcagcctgcaaccaggccaagcatgcgacaagtgatgcagtatttggagggtgatattgctatcccggagttgtcacttcttcagctctcttcgagtggtttagtatttgtgcctgatgaaggtcctgatgatgttgaaatggtgtatcagtgttcatatgttcccgagtcgactctcctctcaggtgggttgttctatcttcatgaagaatgggaacaagtagtgattcacagagatgtgaaggccagtaatgtgctactagacaaggatttcaatggaagactaggagattttggacttgcaagattatgtgaccgtggaacagaccctcaaactactcatgtagctggcacacttgggtatatagccccagagcatgcaagaaccggccgtgccacaacgagcacagatgtgttttctttcggggcatttttgctcgaagttgtctgtggaagaaggccaatagagagacaaggaccagaggtcgatatctttttggttgatagggttttttcgtgttggaatagaggtaatattctagaggcaagagatcaaaaattgagtaatgactttgtagttggggaagtggaattggtgttgaaacttgcattattatgctcttgttcgcagcctgcaaccaggccaagcatgcgacaagtgatgcagtatttggagggtgatattgctatcccggagttgtcacttcttcagctctcttcgagtggtttagtatttgtgcctgatgaaggtcctgatgatgttgaaatggcgtatcagtgttcatatgttcccgagtcgactctcctctcaggtggtcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0042221 GO:0042493 GO:0044464 GO:0046677 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

452

Amino Acids

50.21

Weight (kDa)

4.91

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	707, 1334
AcoI	YGGCCR	2 cut(s)	298, 925
AcuI	CTGAAG	3 cut(s)	78, 602, 1229
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	656, 1283
AgsI	TTSAA	6 cut(s)	184, 511, 674, 811, 1138, 1301
AhdI	GACNNNNNGTC	2 cut(s)	392, 1019
AjnI	CCWGG	2 cut(s)	548, 1175
AleI	CACNNNNGTG	2 cut(s)	320, 947
AluBI	AGCT	4 cut(s)	257, 622, 884, 1249
AluI	AGCT	4 cut(s)	257, 622, 884, 1249
Alw21I	GWGCWC	2 cut(s)	317, 944
Alw26I	GTCTC	2 cut(s)	373, 1000
Ama87I	CYCGRG	2 cut(s)	701, 1328
AoxI	GGCC	8 cut(s)	153, 298, 368, 551, 780, 925, 995, 1178
ApeKI	GCWGC	2 cut(s)	538, 1165
AspS9I	GGNCC	4 cut(s)	386, 659, 1013, 1286
AsuC2I	CCSGG	2 cut(s)	602, 1229
AsuHPI	GGTGA	2 cut(s)	599, 1226
AvaI	CYCGRG	2 cut(s)	701, 1328
AvaII	GGWCC	4 cut(s)	386, 659, 1013, 1286
BauI	CACGAG	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	196, 823
Bbv12I	GWGCWC	2 cut(s)	317, 944
BbvI	GCAGC	2 cut(s)	550, 1177
BceAI	ACGGC	2 cut(s)	285, 912
BciT130I	CCWGG	2 cut(s)	550, 1177
BcnI	CCSGG	2 cut(s)	602, 1229
BcoDI	GTCTC	2 cut(s)	373, 1000
BfaI	CTAG	6 cut(s)	170, 194, 449, 797, 821, 1076
BisI	GCNGC	2 cut(s)	539, 1166
BlsI	GCNGC	2 cut(s)	540, 1167
Bme1390I	CCNGG	4 cut(s)	550, 602, 1177, 1229
Bme18I	GGWCC	4 cut(s)	386, 659, 1013, 1286
BmeRI	GACNNNNNGTC	2 cut(s)	392, 1019
BmeT110I	CYCGRG	2 cut(s)	701, 1328
BmgT120I	GGNCC	4 cut(s)	386, 659, 1013, 1286
BmrFI	CCNGG	4 cut(s)	550, 602, 1177, 1229
BmsI	GCATC	2 cut(s)	561, 1188
BpiI	GAAGAC	2 cut(s)	196, 823
BpuMI	CCSGG	2 cut(s)	602, 1229
BsaJI	CCNNGG	2 cut(s)	226, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 1283
Bse118I	RCCGGY	2 cut(s)	296, 923
Bse1I	ACTGG	2 cut(s)	156, 783
BseBI	CCWGG	2 cut(s)	550, 1177
BseDI	CCNNGG	2 cut(s)	226, 853
BseLI	CCNNNNNNNGG	2 cut(s)	656, 1283
BseMII	CTCAG	2 cut(s)	732, 1359
BseNI	ACTGG	2 cut(s)	156, 783
BseRI	GAGGAG	2 cut(s)	704, 1331
BseX3I	CGGCCG	2 cut(s)	298, 925
BseXI	GCAGC	2 cut(s)	550, 1177
Bsh1285I	CGRYCG	2 cut(s)	301, 928
BshFI	GGCC	8 cut(s)	155, 300, 370, 553, 782, 927, 997, 1180
BsiEI	CGRYCG	2 cut(s)	301, 928
BsiHKAI	GWGCWC	2 cut(s)	317, 944
BsiHKCI	CYCGRG	2 cut(s)	701, 1328
BsiSI	CCGG	4 cut(s)	297, 602, 924, 1229
BslI	CCNNNNNNNGG	2 cut(s)	656, 1283
BsmAI	GTCTC	2 cut(s)	373, 1000
BsnI	GGCC	8 cut(s)	155, 300, 370, 553, 782, 927, 997, 1180
BsoBI	CYCGRG	2 cut(s)	701, 1328
Bsp1286I	GDGCHC	2 cut(s)	317, 944
Bsp143I	GATC	2 cut(s)	460, 1087
BspANI	GGCC	8 cut(s)	155, 300, 370, 553, 782, 927, 997, 1180
BspCNI	CTCAG	2 cut(s)	731, 1358
BspHI	TCATGA	2 cut(s)	112, 739
BsrFI	RCCGGY	2 cut(s)	296, 923
BsrI	ACTGG	2 cut(s)	156, 783
BssAI	RCCGGY	2 cut(s)	296, 923
BssECI	CCNNGG	2 cut(s)	226, 853
BssMI	GATC	2 cut(s)	460, 1087
BssSI	CACGAG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	550, 1177
Bst4CI	ACNGT	2 cut(s)	227, 854
Bst6I	CTCTTC	2 cut(s)	631, 1258
BstC8I	GCNNGC	8 cut(s)	259, 288, 543, 560, 886, 915, 1170, 1187
BstDEI	CTNAG	2 cut(s)	718, 1345
BstDSI	CCRYGG	2 cut(s)	226, 853
BstENI	CCTNNNNNAGG	2 cut(s)	654, 1281
BstKTI	GATC	2 cut(s)	463, 1090
BstMAI	GTCTC	2 cut(s)	373, 1000
BstMBI	GATC	2 cut(s)	460, 1087
BstMCI	CGRYCG	2 cut(s)	301, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 1186
BstNI	CCWGG	2 cut(s)	550, 1177
BstNSI	RCATGY	4 cut(s)	290, 562, 917, 1189
BstSCI	CCNGG	4 cut(s)	548, 600, 1175, 1227
BstV1I	GCAGC	2 cut(s)	550, 1177
BstV2I	GAAGAC	2 cut(s)	196, 823
BstZI	CGGCCG	2 cut(s)	298, 925
BsuRI	GGCC	8 cut(s)	155, 300, 370, 553, 782, 927, 997, 1180
BtgI	CCRYGG	2 cut(s)	226, 853
BtsIMutI	CAGTG	2 cut(s)	692, 1319
Cac8I	GCNNGC	8 cut(s)	259, 288, 543, 560, 886, 915, 1170, 1187
CciI	TCATGA	2 cut(s)	112, 739
Cfr10I	RCCGGY	2 cut(s)	296, 923
Cfr13I	GGNCC	4 cut(s)	386, 659, 1013, 1286
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	8 cut(s)	113, 251, 287, 559, 740, 878, 914, 1186
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	718, 1345
DpnI	GATC	2 cut(s)	462, 1089
DpnII	GATC	2 cut(s)	460, 1087
DriI	GACNNNNNGTC	2 cut(s)	392, 1019
EaeI	YGGCCR	2 cut(s)	298, 925
EagI	CGGCCG	2 cut(s)	298, 925
Eam1104I	CTCTTC	2 cut(s)	631, 1258
Eam1105I	GACNNNNNGTC	2 cut(s)	392, 1019
EarI	CTCTTC	2 cut(s)	631, 1258
EclXI	CGGCCG	2 cut(s)	298, 925
Eco32I	GATATC	2 cut(s)	400, 1027
Eco47I	GGWCC	4 cut(s)	386, 659, 1013, 1286
Eco52I	CGGCCG	2 cut(s)	298, 925
Eco57I	CTGAAG	3 cut(s)	78, 602, 1229
Eco88I	CYCGRG	2 cut(s)	701, 1328
EcoNI	CCTNNNNNAGG	2 cut(s)	654, 1281
EcoO109I	RGGNCCY	2 cut(s)	659, 1286
EcoRII	CCWGG	2 cut(s)	548, 1175
EcoRV	GATATC	2 cut(s)	400, 1027
FaeI	CATG	8 cut(s)	116, 254, 290, 562, 743, 881, 917, 1189
FatI	CATG	8 cut(s)	112, 250, 286, 558, 739, 877, 913, 1185
FauNDI	CATATG	2 cut(s)	694, 1321
FblI	GTMKAC	2 cut(s)	707, 1334
Fnu4HI	GCNGC	2 cut(s)	539, 1166
Fsp4HI	GCNGC	2 cut(s)	539, 1166
FspBI	CTAG	6 cut(s)	170, 194, 449, 797, 821, 1076
GluI	GCNGC	2 cut(s)	539, 1166
HaeIII	GGCC	8 cut(s)	155, 300, 370, 553, 782, 927, 997, 1180
HapII	CCGG	4 cut(s)	297, 602, 924, 1229
Hin1II	CATG	8 cut(s)	116, 254, 290, 562, 743, 881, 917, 1189
HincII	GTYRAC	2 cut(s)	708, 1335
HindII	GTYRAC	2 cut(s)	708, 1335
HinfI	GANTC	8 cut(s)	49, 75, 136, 704, 709, 763, 1331, 1336
HpaII	CCGG	4 cut(s)	297, 602, 924, 1229
HphI	GGTGA	2 cut(s)	599, 1226
Hpy166II	GTNNAC	2 cut(s)	708, 1335
Hpy188III	TCNNGA	8 cut(s)	113, 449, 662, 701, 740, 1076, 1289, 1328
Hpy8I	GTNNAC	2 cut(s)	708, 1335
HpyAV	CCTTC	6 cut(s)	145, 360, 650, 772, 987, 1277
HpyCH4III	ACNGT	2 cut(s)	227, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 1186
HpyF3I	CTNAG	2 cut(s)	718, 1345
Hsp92II	CATG	8 cut(s)	116, 254, 290, 562, 743, 881, 917, 1189
Kzo9I	GATC	2 cut(s)	460, 1087
Lsp1109I	GCAGC	2 cut(s)	550, 1177
LweI	GCATC	2 cut(s)	561, 1188
MaeI	CTAG	6 cut(s)	170, 194, 449, 797, 821, 1076
MaeIII	GTNAC	5 cut(s)	46, 221, 609, 848, 1236
MalI	GATC	2 cut(s)	462, 1089
MboI	GATC	2 cut(s)	460, 1087
MhlI	GDGCHC	2 cut(s)	317, 944
MluCI	AATT	5 cut(s)	55, 467, 500, 1094, 1127
MlyI	GAGTC	6 cut(s)	43, 84, 703, 713, 1330, 1340
MmeI	TCCRAC	2 cut(s)	410, 1037
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	6 cut(s)	144, 320, 523, 771, 947, 1150
MspI	CCGG	4 cut(s)	297, 602, 924, 1229
MspR9I	CCNGG	4 cut(s)	550, 602, 1177, 1229
MvaI	CCWGG	2 cut(s)	550, 1177
MwoI	GCNNNNNNNGC	2 cut(s)	559, 1186
NciI	CCSGG	2 cut(s)	602, 1229
NdeI	CATATG	2 cut(s)	694, 1321
NdeII	GATC	2 cut(s)	460, 1087
NlaIII	CATG	8 cut(s)	116, 254, 290, 562, 743, 881, 917, 1189
NmuCI	GTSAC	5 cut(s)	46, 221, 609, 848, 1236
NspI	RCATGY	4 cut(s)	290, 562, 917, 1189
OliI	CACNNNNGTG	2 cut(s)	320, 947
PaeI	GCATGC	4 cut(s)	290, 562, 917, 1189
PagI	TCATGA	2 cut(s)	112, 739
PfeI	GAWTC	2 cut(s)	136, 763
PfoI	TCCNGGA	2 cut(s)	600, 1227
PkrI	GCNGC	2 cut(s)	540, 1167
PleI	GAGTC	6 cut(s)	43, 83, 703, 712, 1330, 1339
PpsI	GAGTC	6 cut(s)	43, 83, 703, 712, 1330, 1339
PpuMI	RGGWCCY	2 cut(s)	659, 1286
Psp5II	RGGWCCY	2 cut(s)	659, 1286
Psp6I	CCWGG	2 cut(s)	548, 1175
PspGI	CCWGG	2 cut(s)	548, 1175
PspPI	GGNCC	4 cut(s)	386, 659, 1013, 1286
PspPPI	RGGWCCY	2 cut(s)	659, 1286
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	6 cut(s)	144, 320, 523, 771, 947, 1150
SalI	GTCGAC	2 cut(s)	706, 1333
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	539, 1166
Sau3AI	GATC	2 cut(s)	460, 1087
Sau96I	GGNCC	4 cut(s)	386, 659, 1013, 1286
SchI	GAGTC	6 cut(s)	43, 84, 703, 713, 1330, 1340
ScrFI	CCNGG	4 cut(s)	550, 602, 1177, 1229
SduI	GDGCHC	2 cut(s)	317, 944
SfaNI	GCATC	2 cut(s)	561, 1188
SinI	GGWCC	4 cut(s)	386, 659, 1013, 1286
SmiMI	CAYNNNNRTG	6 cut(s)	144, 320, 523, 771, 947, 1150
SphI	GCATGC	4 cut(s)	290, 562, 917, 1189
Sse9I	AATT	5 cut(s)	55, 467, 500, 1094, 1127
SspI	AATATT	2 cut(s)	445, 1072
SspMI	CTAG	6 cut(s)	170, 194, 449, 797, 821, 1076
StyD4I	CCNGG	4 cut(s)	548, 600, 1175, 1227
TaaI	ACNGT	2 cut(s)	227, 854
TaqI	TCGA	8 cut(s)	348, 396, 629, 707, 975, 1023, 1256, 1334
TasI	AATT	5 cut(s)	55, 467, 500, 1094, 1127
TfiI	GAWTC	2 cut(s)	136, 763
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	692, 1319
TseFI	GTSAC	5 cut(s)	46, 221, 609, 848, 1236
TseI	GCWGC	2 cut(s)	538, 1165
Tsp45I	GTSAC	5 cut(s)	46, 221, 609, 848, 1236
TspDTI	ATGAA	8 cut(s)	101, 129, 669, 681, 728, 756, 1296, 1308
TspRI	CASTG	2 cut(s)	692, 1319
VpaK11BI	GGWCC	4 cut(s)	386, 659, 1013, 1286
XagI	CCTNNNNNAGG	2 cut(s)	654, 1281
XbaI	TCTAGA	2 cut(s)	448, 1075
XceI	RCATGY	4 cut(s)	290, 562, 917, 1189
XmiI	GTMKAC	2 cut(s)	707, 1334
XspI	CTAG	6 cut(s)	170, 194, 449, 797, 821, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.