Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019282

Physical Location & Seq

Genomic Coordinates Forward (+)

8922553 .. 8924073

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16938

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCTAATGGAAGCTTGGACAAATACCTCTTTGATCAACCTGAGCTGACCCTTAATTGGAGCCAGAGGTTTAAAGTCATCACAGGTGTGGCTTCAGGGCTGTTCTATCTTCATGAAGAATGGGAACAGGTTGTGATTCATAGAGATGTGAAGGCCAGTAATGTGTTGCTAGATGGGCAATTGAATGGAAGGCTAGGAGATTTCGGGCTTGCAAGATTATACGACCATGGAACAGACCCTCAAACTACTTATATGGTTGGAACGCTTGGGTACCTAGCTCCAGAGTACGCAAGAACAGGTCGGGCCACCACGAGGAGCGACGTGTTTGCTTTTGGGGTATTTTTGCTAGAAGTTGCTTGCGGAAAAAGGCCAATTAAGACACAGGGTCCAGAAGATGTGATATTGATTGATTGGGTGTTTTCTTGTTGGAATAGGAGTAACATCCTTGAGGCAAGAGATCAGAGTGTTGGTAATGATTTTGTAGCTGAGGAAGTGGAGTTGGTGTTGAAGCTTGGGCTTTTGTGCTCTCATTCGGAGCCAGCGGCAAGGCCAAGCATGCGACAAGTCGTTCAGTACTTGGCTGGTGATGTTGCTTTGCCGGAACTGTCACTCCTCAGGCTTTCTTCTAGTGGCTTAACGGTTGGACACCGTGAAGGTTTTGATGACTATGCTATGTCGTATCTGTCTTCTTTAGAGCATCTCCAATGGAGTTTTCTTTTAATTTGTGTCAAATTCAAATTTAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

27.97

Weight (kDa)

5.25

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 193	3.7e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 191	1.5e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019282)

Species	Orthologous Gene IDs
malus_domestica	MD12G1146400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora	Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha	Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	2 cut(s)	360, 542
AcsI	RAATTY	2 cut(s)	731, 737
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	272, 287, 575
AfiI	CCNNNNNNNGG	2 cut(s)	57, 312
AflIII	ACRYGT	2 cut(s)	321, 744
AgsI	TTSAA	3 cut(s)	184, 508, 736
AhdI	GACNNNNNGTC	1 cut(s)	384
AjiI	CACGTC	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AleI	CACNNNNGTG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	5 cut(s)	15, 46, 278, 485, 511
AluI	AGCT	5 cut(s)	15, 46, 278, 485, 511
Alw21I	GWGCWC	1 cut(s)	527
AoxI	GGCC	4 cut(s)	153, 303, 368, 548
ApoI	RAATTY	2 cut(s)	731, 737
Asp718I	GGTACC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	303, 386
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	527
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	5 cut(s)	170, 194, 275, 347, 627
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmcAI	AGTACT	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	386
BmeRI	GACNNNNNGTC	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	303, 386
BmiI	GGNNCC	4 cut(s)	62, 272, 387, 537
BmsI	GCATC	1 cut(s)	706
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	2 cut(s)	42, 486
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 312
Bse1I	ACTGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	57, 312
BseMII	CTCAG	3 cut(s)	33, 477, 628
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	328, 602
BshFI	GGCC	4 cut(s)	155, 305, 370, 550
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	57, 312
BsnI	GGCC	4 cut(s)	155, 305, 370, 550
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	34, 457
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	2 cut(s)	360, 542
BspANI	GGCC	4 cut(s)	155, 305, 370, 550
BspCNI	CTCAG	3 cut(s)	34, 478, 627
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	4 cut(s)	62, 272, 387, 537
BspT107I	GGYRCC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	34, 457
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	606, 640, 650
BstC8I	GCNNGC	4 cut(s)	210, 358, 540, 557
BstDEI	CTNAG	3 cut(s)	42, 486, 614
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	37, 460
BstMBI	GATC	2 cut(s)	34, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 556
BstNSI	RCATGY	2 cut(s)	559, 748
BstV2I	GAAGAC	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	4 cut(s)	155, 305, 370, 550
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	441
Cac8I	GCNNGC	4 cut(s)	210, 358, 540, 557
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	303, 386
Csp6I	GTAC	3 cut(s)	271, 286, 574
CviAII	CATG	4 cut(s)	113, 227, 556, 745
CviQI	GTAC	3 cut(s)	271, 286, 574
DdeI	CTNAG	3 cut(s)	42, 486, 614
DpnI	GATC	2 cut(s)	36, 459
DpnII	GATC	2 cut(s)	34, 457
DraI	TTTAAA	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	384
Eam1105I	GACNNNNNGTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	116, 230, 559, 748
FatI	CATG	4 cut(s)	112, 226, 555, 744
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	5 cut(s)	170, 194, 275, 347, 627
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	4 cut(s)	155, 305, 370, 550
HapII	CCGG	1 cut(s)	599
Hin1II	CATG	4 cut(s)	116, 230, 559, 748
HindIII	AAGCTT	2 cut(s)	13, 509
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	596
Hpy188I	TCNGA	2 cut(s)	462, 535
Hpy188III	TCNNGA	3 cut(s)	113, 281, 389
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	145, 183, 647
HpyCH4III	ACNGT	3 cut(s)	606, 640, 650
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 556
HpyF3I	CTNAG	3 cut(s)	42, 486, 614
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	116, 230, 559, 748
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	34, 457
LmnI	GCTCC	4 cut(s)	60, 283, 315, 535
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	5 cut(s)	170, 194, 275, 347, 627
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	437, 606
MalI	GATC	2 cut(s)	36, 459
MboI	GATC	2 cut(s)	34, 457
MboII	GAAGA	5 cut(s)	101, 128, 404, 615, 678
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	6 cut(s)	55, 179, 372, 720, 731, 737
MmeI	TCCRAC	3 cut(s)	238, 407, 622
MnlI	CCTC	7 cut(s)	38, 60, 249, 306, 442, 481, 623
MseI	TTAA	6 cut(s)	54, 72, 375, 635, 719, 741
MslI	CAYNNNNRTG	2 cut(s)	86, 144
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	175, 556
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	34, 457
NlaIII	CATG	4 cut(s)	116, 230, 559, 748
NlaIV	GGNNCC	4 cut(s)	62, 272, 387, 537
NmuCI	GTSAC	1 cut(s)	606
NspI	RCATGY	2 cut(s)	559, 748
OliI	CACNNNNGTG	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	112
PciI	ACATGT	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	544
PscI	ACATGT	1 cut(s)	744
PspN4I	GGNNCC	4 cut(s)	62, 272, 387, 537
PspPI	GGNCC	2 cut(s)	303, 386
RsaI	GTAC	3 cut(s)	272, 287, 575
RsaNI	GTAC	3 cut(s)	271, 286, 574
RseI	CAYNNNNRTG	2 cut(s)	86, 144
SaqAI	TTAA	6 cut(s)	54, 72, 375, 635, 719, 741
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	2 cut(s)	34, 457
Sau96I	GGNCC	2 cut(s)	303, 386
ScaI	AGTACT	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	706
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	86, 144
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	6 cut(s)	55, 179, 372, 720, 731, 737
SsiI	CCGC	2 cut(s)	360, 542
SspMI	CTAG	5 cut(s)	170, 194, 275, 347, 627
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	606, 640, 650
TaiI	ACGT	1 cut(s)	324
TasI	AATT	6 cut(s)	55, 179, 372, 720, 731, 737
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	6 cut(s)	54, 72, 375, 635, 719, 741
Tru9I	TTAA	6 cut(s)	54, 72, 375, 635, 719, 741
TseFI	GTSAC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	3 cut(s)	101, 128, 129
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	2 cut(s)	731, 737
XceI	RCATGY	2 cut(s)	559, 748
XspI	CTAG	5 cut(s)	170, 194, 275, 347, 627
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.