Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019954

Physical Location & Seq

Genomic Coordinates Forward (+)

25288916 .. 25289952

Gene Structure 1037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGCGACGACACTCCTGCCGCGCTTGGAACTGGCCCAGAGGTCTCCAACGGCGTCGCGGCGGCGGCTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTTCCTTCGCGCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCAACGCGAAGCCTGCACAGTCGAACGTAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

90

Amino Acids

9.7

Weight (kDa)

9.51

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata	RLG00000013912
rosa_multiflora	Rmu_sc0008184.1_g000008
rosa_rugosa	Rorug06G0042000
rosa_samantha	Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	23, 59, 132, 191, 258
AciI	CCGC	6 cut(s)	21, 59, 62, 65, 235, 256
AclWI	GGATC	1 cut(s)	168
AcyI	GRCGYC	3 cut(s)	54, 77, 171
AflII	CTTAAG	1 cut(s)	242
AluBI	AGCT	2 cut(s)	88, 241
AluI	AGCT	2 cut(s)	88, 241
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	25, 134
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	67, 158
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	49
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	7 cut(s)	21, 60, 63, 66, 236, 239, 256
BlsI	GCNGC	7 cut(s)	22, 61, 64, 67, 237, 240, 257
BmgT120I	GGNCC	1 cut(s)	35
BsaHI	GRCGYC	3 cut(s)	54, 77, 171
BsaI	GGTCTC	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	98, 126
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	5 cut(s)	23, 59, 132, 191, 258
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	80, 110
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	6 cut(s)	21, 59, 62, 65, 235, 256
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	5 cut(s)	23, 59, 132, 191, 258
BspPI	GGATC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	3 cut(s)	54, 77, 171
Bst4CI	ACNGT	2 cut(s)	123, 204
BstACI	GRCGYC	3 cut(s)	54, 77, 171
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	69, 156
BstFNI	CGCG	5 cut(s)	23, 59, 132, 191, 258
BstHHI	GCGC	2 cut(s)	25, 134
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 85, 197, 244
BstUI	CGCG	5 cut(s)	23, 59, 132, 191, 258
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	2 cut(s)	25, 134
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	3 cut(s)	43, 85, 179
CviJI	RGCY	6 cut(s)	36, 68, 88, 95, 196, 241
CviKI_1	RGCY	6 cut(s)	36, 68, 88, 95, 196, 241
DdeI	CTNAG	2 cut(s)	69, 156
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	90
FaiI	YATR	1 cut(s)	266
Fnu4HI	GCNGC	7 cut(s)	21, 60, 63, 66, 236, 239, 256
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	7 cut(s)	21, 60, 63, 66, 236, 239, 256
GlaI	GCGC	2 cut(s)	24, 133
GluI	GCNGC	7 cut(s)	21, 60, 63, 66, 236, 239, 256
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	80, 110
HgaI	GACGC	3 cut(s)	43, 85, 179
HhaI	GCGC	2 cut(s)	25, 134
Hin1I	GRCGYC	3 cut(s)	54, 77, 171
Hin6I	GCGC	2 cut(s)	23, 132
HinP1I	GCGC	2 cut(s)	23, 132
HpaII	CCGG	2 cut(s)	80, 110
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	3 cut(s)	11, 59, 173
HpyAV	CCTTC	2 cut(s)	137, 211
HpyCH4III	ACNGT	2 cut(s)	123, 204
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 85, 197, 244
HpyF3I	CTNAG	2 cut(s)	69, 156
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	3 cut(s)	54, 77, 171
HspAI	GCGC	2 cut(s)	23, 132
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	85, 112, 139
LpnPI	CCDG	6 cut(s)	18, 30, 51, 93, 123, 210
Lsp1109I	GCAGC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	127, 235
MhlI	GDGCHC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	34, 66, 76, 147, 175, 253
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	80, 110
MvnI	CGCG	5 cut(s)	23, 59, 132, 191, 258
MwoI	GCNNNNNNNGC	4 cut(s)	65, 85, 197, 244
NdeII	GATC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	7 cut(s)	22, 61, 64, 67, 237, 240, 257
Psp124BI	GAGCTC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	7 cut(s)	21, 60, 63, 66, 236, 239, 256
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	45, 90, 151, 213, 243, 264
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SsiI	CCGC	6 cut(s)	21, 59, 62, 65, 235, 256
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	123, 204
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	206
TauI	GCSGC	6 cut(s)	23, 62, 65, 68, 238, 258
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.