Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008184.1

Orthogroup ID

OG0019954

Physical Location & Seq

Genomic Coordinates Reverse (-)

34248 .. 35157

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008184.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggcgacgactctcctgccgcaactgggccgggcccagaggtctccaacggcgtggcggcggtggcggctgagaggacgccggaggagcttgtagccaagtccatcgctccggtgaagaaacagttcctttgcgctcctcccgtcagaccttgctctaaggatcaaaacgacgccgtctctaagggcaacgcaaagcctgcccagtcgaacgtagtgaaggagaagaagtccaagcggcagctcaagcgtgaacgccgcgaggtacagaaatcgcccctcggtatctgtccagaggtagcaaagaaaggagatgttactcggtgtccatgtaatgataagtgccactacagcaatgacatagaagcctataaggctcagaaacctgaggatatagagggagaatgtccttttatgagccatgtccttatggtttgtcatgtaggttcttgggtacgcataaaaatggtgttgcagatggagatgtcaatgcttgtagaagaagctctgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

8.6

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata	RLG00000013912
rosa_multiflora	Rmu_sc0008184.1_g000008
rosa_rugosa	Rorug06G0042000
rosa_samantha	Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	6 cut(s)	21, 59, 62, 68, 238, 259
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	80, 174
AfaI	GTAC	2 cut(s)	267, 456
AfiI	CCNNNNNNNGG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	91, 244, 506
AluI	AGCT	3 cut(s)	91, 244, 506
Alw26I	GTCTC	2 cut(s)	49, 184
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	29, 34
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	29, 34, 35
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	113, 472
BceAI	ACGGC	2 cut(s)	67, 161
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	49, 184
BfmI	CTRYAG	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	6 cut(s)	21, 60, 69, 239, 242, 259
BlsI	GCNGC	6 cut(s)	22, 61, 70, 240, 243, 260
Bme1390I	CCNGG	1 cut(s)	33
BmgT120I	GGNCC	3 cut(s)	29, 34, 35
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	2 cut(s)	36, 199
BmuI	ACTGGG	2 cut(s)	36, 199
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	2 cut(s)	80, 174
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	31, 205
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	4 cut(s)	63, 378, 392, 500
BseNI	ACTGG	2 cut(s)	31, 205
BseRI	GAGGAG	2 cut(s)	101, 129
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	31, 36
BsiSI	CCGG	3 cut(s)	32, 83, 113
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	49, 184
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	31, 36
Bso31I	GGTCTC	1 cut(s)	49
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	21, 59, 62, 68, 238, 259
BspANI	GGCC	2 cut(s)	31, 36
BspCNI	CTCAG	4 cut(s)	64, 379, 391, 501
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	31, 205
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	80, 174
Bst4CI	ACNGT	1 cut(s)	126
BstACI	GRCGYC	2 cut(s)	80, 174
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	6 cut(s)	72, 159, 183, 378, 387, 509
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	49, 184
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	31, 36
BtgZI	GCGATG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	29, 34, 35
CseI	GACGC	2 cut(s)	88, 182
Csp6I	GTAC	2 cut(s)	266, 455
CviAII	CATG	3 cut(s)	330, 422, 440
CviQI	GTAC	2 cut(s)	266, 455
DdeI	CTNAG	6 cut(s)	72, 159, 183, 378, 387, 509
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	3 cut(s)	333, 425, 443
FaiI	YATR	9 cut(s)	331, 362, 372, 395, 416, 423, 431, 441, 461
FatI	CATG	3 cut(s)	329, 421, 439
Fnu4HI	GCNGC	6 cut(s)	21, 60, 69, 239, 242, 259
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	21, 60, 69, 239, 242, 259
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	21, 60, 69, 239, 242, 259
HaeIII	GGCC	2 cut(s)	31, 36
HapII	CCGG	3 cut(s)	32, 83, 113
HgaI	GACGC	2 cut(s)	88, 182
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	80, 174
Hin1II	CATG	3 cut(s)	333, 425, 443
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	3 cut(s)	32, 83, 113
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	149, 381, 510
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	2 cut(s)	11, 176
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	475
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
HpyF3I	CTNAG	6 cut(s)	72, 159, 183, 378, 387, 509
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	80, 174
Hsp92II	CATG	3 cut(s)	333, 425, 443
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	88, 115, 142
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	130, 238, 512
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	34, 69, 79, 150, 256, 289, 290, 382, 391
MroXI	GAANNNNTTC	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	3 cut(s)	32, 83, 113
MspR9I	CCNGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	333, 425, 443
NlaIV	GGNNCC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	22, 61, 70, 240, 243, 260
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	36
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	29, 34, 35
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	267, 456
RsaNI	GTAC	2 cut(s)	266, 455
RseI	CAYNNNNRTG	1 cut(s)	464
SatI	GCNGC	6 cut(s)	21, 60, 69, 239, 242, 259
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	29, 34, 35
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	6 cut(s)	21, 59, 62, 68, 238, 259
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	209
TauI	GCSGC	5 cut(s)	23, 62, 71, 241, 261
TseI	GCWGC	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.