Rh6BG165700

tRNA-dihydrouridine(47) synthase NAD(P)( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019954
Physical Location & Seq
Forward (+)
26823168 .. 26823362
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG165700.1

Sequence Viewer

Length: 195 bp
ATGGGCGACGACACTCCTGCCGCAATTGGAAAGGGCCCAGAGGTCTCCAACGGCGTCGCCGCGGCGGCTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTTCCTTCGCGCTCCTCCCGTCAAAACGACGCCGTCTGTGAGGGCAACGCGAAGCCTGCACAGTCGAACGTAG

Protein Analysis

64

Amino Acids

6.67

Weight (kDa)

10.15

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019954)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata RLG00000013912
rosa_multiflora Rmu_sc0008184.1_g000008
rosa_rugosa Rorug06G0042000
rosa_samantha Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 62, 132, 172
AciI CCGC 4 cut(s) 21, 60, 62, 65
AcyI GRCGYC 3 cut(s) 54, 77, 152
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 34
ApaI GGGCCC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 34, 35
AsuHPI GGTGA 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 38
BanII GRGCYC 2 cut(s) 38, 90
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 1 cut(s) 110
BceAI ACGGC 2 cut(s) 67, 139
BcgI CGANNNNNNTGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 49
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 4 cut(s) 21, 60, 63, 66
BlsI GCNGC 4 cut(s) 22, 61, 64, 67
BmgT120I GGNCC 2 cut(s) 34, 35
BmiI GGNNCC 1 cut(s) 36
BsaHI GRCGYC 3 cut(s) 54, 77, 152
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 2 cut(s) 98, 126
BseSI GKGCMC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 3 cut(s) 62, 132, 172
BshFI GGCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 80, 110
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 49
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 38, 90
BspACI CCGC 4 cut(s) 21, 60, 62, 65
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 3 cut(s) 62, 132, 172
BspLI GGNNCC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 60
BssNI GRCGYC 3 cut(s) 54, 77, 152
Bst4CI ACNGT 2 cut(s) 123, 185
BstACI GRCGYC 3 cut(s) 54, 77, 152
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 60
BstFNI CGCG 3 cut(s) 62, 132, 172
BstHHI GCGC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 65, 85, 178
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 3 cut(s) 62, 132, 172
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 34, 35
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 3 cut(s) 43, 85, 160
CviJI RGCY 5 cut(s) 36, 68, 88, 95, 177
CviKI_1 RGCY 5 cut(s) 36, 68, 88, 95, 177
DdeI CTNAG 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 38, 90
Eco31I GGTCTC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 34
EcoT38I GRGCYC 2 cut(s) 38, 90
Fnu4HI GCNGC 4 cut(s) 21, 60, 63, 66
FriOI GRGCYC 2 cut(s) 38, 90
Fsp4HI GCNGC 4 cut(s) 21, 60, 63, 66
GlaI GCGC 1 cut(s) 133
GluI GCNGC 4 cut(s) 21, 60, 63, 66
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 80, 110
HgaI GACGC 3 cut(s) 43, 85, 160
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 3 cut(s) 54, 77, 152
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HpaII CCGG 2 cut(s) 80, 110
HphI GGTGA 1 cut(s) 124
Hpy99I CGWCG 3 cut(s) 11, 59, 154
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 123, 185
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 85, 178
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 3 cut(s) 54, 77, 152
HspAI GCGC 1 cut(s) 132
KspI CCGCGG 1 cut(s) 63
LmnI GCTCC 3 cut(s) 85, 112, 139
LpnPI CCDG 5 cut(s) 30, 51, 93, 123, 191
MaeII ACGT 1 cut(s) 191
MboII GAAGA 1 cut(s) 127
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 38, 90
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 5 cut(s) 34, 66, 76, 147, 156
MroXI GAANNNNTTC 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 80, 110
MunI CAATTG 1 cut(s) 24
MvnI CGCG 3 cut(s) 62, 132, 172
MwoI GCNNNNNNNGC 3 cut(s) 65, 85, 178
NlaIV GGNNCC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 22, 61, 64, 67
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 36
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 34, 35
PsyI GACNNNGTC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 90
SacII CCGCGG 1 cut(s) 63
SatI GCNGC 4 cut(s) 21, 60, 63, 66
Sau96I GGNCC 2 cut(s) 34, 35
SduI GDGCHC 2 cut(s) 38, 90
SetI ASST 3 cut(s) 45, 90, 194
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
Sse9I AATT 1 cut(s) 24
SsiI CCGC 4 cut(s) 21, 60, 62, 65
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 2 cut(s) 123, 185
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 187
TasI AATT 1 cut(s) 24
TauI GCSGC 4 cut(s) 23, 62, 65, 68
Tth111I GACNNNGTC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.