Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019954

Physical Location & Seq

Genomic Coordinates Forward (+)

31533514 .. 31534425

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTACTCCAATTGTGGAACTAGAAAATTGGAAAGAAAAGTTCCAAAAAGAAACAAGAGCAAAGAAATACACCCTTTATCTCATTACCCATTTGCACGTCGTTTCACTCTTCACCTGTTTGCGTTTAAACATAGCACCATGGGCGACGACACTCCTGCCGCAACTGGAACGGGCCCAGAGGTCTCCAACGGCATGGTGGCGGCGGCTGAGAGGACGCCGAAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTACCTTCGCCCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCAACGCGAAGCCTGCACAGTCGAACGTAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTTGGTATCTGTCCAGAGGTAGCAAAGAAAGGAGATGTTAGTCGGTGTCCATATAATGATAAGTGCCGCTACAGCCATGACATAGAAGCCTATAAGGCTCACGTAGTTTTGAATGCTTGTCTAGTATTTGACTCGTTTGATGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

9.68

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	139 - 171	7.8e-11	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata	RLG00000013912
rosa_multiflora	Rmu_sc0008184.1_g000008
rosa_rugosa	Rorug06G0042000
rosa_samantha	Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	329, 396
AciI	CCGC	6 cut(s)	159, 200, 203, 373, 394, 481
AclWI	GGATC	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	215, 309
AfaI	GTAC	3 cut(s)	5, 263, 402
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	526
AjiI	CACGTC	1 cut(s)	98
AluBI	AGCT	2 cut(s)	226, 379
AluI	AGCT	2 cut(s)	226, 379
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	172
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	172, 173
AsuHPI	GGTGA	2 cut(s)	104, 262
BaeGI	GKGCMC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	176, 228
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	205, 296
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	21, 536
BfmI	CTRYAG	1 cut(s)	484
BfrI	CTTAAG	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	7 cut(s)	159, 201, 204, 374, 377, 394, 481
BlsI	GCNGC	7 cut(s)	160, 202, 205, 375, 378, 395, 482
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	172, 173
BmiI	GGNNCC	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	517
BsaHI	GRCGYC	2 cut(s)	215, 309
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	138, 415
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	138, 415
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	329, 396
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	187
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	176, 228
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	6 cut(s)	159, 200, 203, 373, 394, 481
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	329, 396
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	138, 415
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	2 cut(s)	215, 309
BssT1I	CCWWGG	2 cut(s)	138, 415
Bst4CI	ACNGT	2 cut(s)	261, 342
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	2 cut(s)	215, 309
BstAFI	CTTAAG	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	207, 294
BstDSI	CCRYGG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	329, 396
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 223, 335, 382, 486, 509
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	2 cut(s)	329, 396
BstV1I	GCAGC	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	172, 173
CseI	GACGC	2 cut(s)	223, 317
Csp6I	GTAC	3 cut(s)	4, 262, 401
CviAII	CATG	3 cut(s)	139, 193, 491
CviJI	RGCY	9 cut(s)	174, 206, 226, 233, 334, 379, 489, 503, 512
CviKI_1	RGCY	9 cut(s)	174, 206, 226, 233, 334, 379, 489, 503, 512
CviQI	GTAC	3 cut(s)	4, 262, 401
DdeI	CTNAG	2 cut(s)	207, 294
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	138, 415
Eco24I	GRGCYC	2 cut(s)	176, 228
Eco31I	GGTCTC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	138, 415
EcoT38I	GRGCYC	2 cut(s)	176, 228
ErhI	CCWWGG	2 cut(s)	138, 415
FaeI	CATG	3 cut(s)	142, 196, 494
FaiI	YATR	8 cut(s)	132, 140, 194, 466, 468, 492, 497, 507
FatI	CATG	3 cut(s)	138, 192, 490
Fnu4HI	GCNGC	7 cut(s)	159, 201, 204, 374, 377, 394, 481
FriOI	GRGCYC	2 cut(s)	176, 228
Fsp4HI	GCNGC	7 cut(s)	159, 201, 204, 374, 377, 394, 481
FspBI	CTAG	2 cut(s)	21, 536
GluI	GCNGC	7 cut(s)	159, 201, 204, 374, 377, 394, 481
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	2 cut(s)	223, 317
Hin1I	GRCGYC	2 cut(s)	215, 309
Hin1II	CATG	3 cut(s)	142, 196, 494
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	104, 262
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	3 cut(s)	102, 149, 311
HpyAV	CCTTC	3 cut(s)	214, 275, 349
HpyCH4III	ACNGT	2 cut(s)	261, 342
HpyCH4IV	ACGT	3 cut(s)	97, 348, 516
HpyCH4V	TGCA	2 cut(s)	95, 338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 223, 335, 382, 486, 509
HpyF3I	CTNAG	2 cut(s)	207, 294
HpySE526I	ACGT	3 cut(s)	97, 348, 516
Hsp92I	GRCGYC	2 cut(s)	215, 309
Hsp92II	CATG	3 cut(s)	142, 196, 494
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	223, 250
LpnPI	CCDG	7 cut(s)	128, 150, 168, 189, 261, 348, 441
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	21, 536
MaeII	ACGT	3 cut(s)	97, 348, 516
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	101, 265, 373
MfeI	CAATTG	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	176, 228
MluCI	AATT	2 cut(s)	10, 26
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	172, 204, 282, 285, 313, 391, 424
MseI	TTAA	2 cut(s)	126, 381
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	1 cut(s)	248
MssI	GTTTAAAC	1 cut(s)	127
MunI	CAATTG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	532
MvnI	CGCG	2 cut(s)	329, 396
MwoI	GCNNNNNNNGC	6 cut(s)	141, 223, 335, 382, 486, 509
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	142, 196, 494
NlaIV	GGNNCC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	532
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	7 cut(s)	160, 202, 205, 375, 378, 395, 482
PleI	GAGTC	1 cut(s)	539
PmeI	GTTTAAAC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	174
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	172, 173
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	3 cut(s)	5, 263, 402
RsaNI	GTAC	3 cut(s)	4, 262, 401
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	126, 381
SatI	GCNGC	7 cut(s)	159, 201, 204, 374, 377, 394, 481
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	172, 173
SchI	GAGTC	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	176, 228
SfcI	CTRYAG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	10, 26
SsiI	CCGC	6 cut(s)	159, 200, 203, 373, 394, 481
SspMI	CTAG	2 cut(s)	21, 536
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	138, 415
TaaI	ACNGT	2 cut(s)	261, 342
TaiI	ACGT	3 cut(s)	100, 351, 519
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	10, 26
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	6 cut(s)	161, 203, 206, 376, 396, 483
Tru1I	TTAA	2 cut(s)	126, 381
Tru9I	TTAA	2 cut(s)	126, 381
TseI	GCWGC	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	2 cut(s)	21, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.