Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0019954

Physical Location & Seq

Genomic Coordinates Forward (+)

5368407 .. 5372012

Gene Structure 3606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTCAGGATCCCAAGTGGCTTCAGAATCTATGTTAGTAAGATGGTCTTAATAACTGCCATGCATTTTCTTTGTAATGAGCAGATTACTATTCAAGGGCTTGCAGCTGCCAAGCAACTTCTCAACTTTGACTTGGTATTTAACTATTTATGGTCTCCCACAACATGTTATTCCTACCGATCAGAACAGGGCACGTGTGATCTCACCGTATACCTTATCAGTAAGCTGCCAAACCCTACTCATCCTCAGAAGAAAATGAAATTGACAAAGTACGAAATCTGCCGAGGACTAGGTGGAGGAATCATTGAAATAGTCTTCACTTGTGCAATTGGAAACCAATTCAAAGAAGACAGCAGAAGCACTGAAACTATGCTATCTAAACTCTTGTACTCTTTGCTTCCATGTTTGAGAATGGAGGAAAAATATGCTTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCTTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACCAATAACTTCCATCCTTCTTGTCGTATATCTGGTGGAGACGATTTATATAAGGGTTTTTTAGACAACCGATTGGTTATGATTAAGTGGATCCAAACTTCATTTCGTTATGAGATCTGGAGAGATCAGGCTATTCGTGACATTATAATATCAATGCAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTCCCTACACCAGCTCTGGTGCACGAATATGCAGCGAAAGGAGTTCTCAACTCTGAAGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAAAACTAGACTACGTATTGCGAAGCAGCTTGCAAATGCATTTACATATCTCCATACAGCATTCCCCAGACCCATCATTCATAGAGACCTCAGGCCCGCATGTATTATTTTGGACCATGACTTTACCCCCAAATTATGTAACTTCTCACTTTCCATAACCATTCCTCCTGAGCAATCACATGTCTATCATGACTTTAGGGGTGGAATGGAGGGGTACCTTGACCCTGCGTATATGAGGTCTGGTTACATTACACAAAAGACTGATGTTTATAACTTTGGTGTCATTTTACTTGTTTTCTTGAGTGGACGAGAAGCTTATCAACACAATCAACCAGGAGAAGAAAAATACCTTGTGTCATATGTGAAATTACATGCTTCTGATGACCAGTTTCTGACTATTGTGGATCCTAAAATACTTGAGGAGATAAAAGGAGAAGATGAGCAAGCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGAGGAAAGTGAACGACGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

467

Amino Acids

53.43

Weight (kDa)

6.41

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	198 - 414	1.3e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	200 - 456	1.6e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata	RLG00000013912
rosa_multiflora	Rmu_sc0008184.1_g000008
rosa_rugosa	Rorug06G0042000
rosa_samantha	Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	674, 1095
Acc65I	GGTACC	1 cut(s)	1038
AccB1I	GGYRCC	1 cut(s)	1038
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	921
AclWI	GGATC	7 cut(s)	4, 17, 465, 613, 626, 1223, 1236
AcoI	YGGCCR	2 cut(s)	1340, 1359
AcuI	CTGAAG	2 cut(s)	7, 810
AcvI	CACGTG	1 cut(s)	195
AfaI	GTAC	4 cut(s)	272, 389, 1040, 1374
AfiI	CCNNNNNNNGG	2 cut(s)	822, 1303
AflIII	ACRYGT	3 cut(s)	164, 194, 1003
AgsI	TTSAA	4 cut(s)	95, 308, 343, 712
AjnI	CCWGG	1 cut(s)	1156
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	5 cut(s)	107, 226, 749, 853, 1139
AluI	AGCT	5 cut(s)	107, 226, 749, 853, 1139
Alw21I	GWGCWC	2 cut(s)	695, 759
Alw26I	GTCTC	3 cut(s)	159, 561, 903
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	7 cut(s)	4, 17, 465, 613, 626, 1223, 1236
AlwNI	CAGNNNCTG	1 cut(s)	1216
AoxI	GGCC	3 cut(s)	917, 1340, 1359
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	8 cut(s)	104, 107, 226, 723, 726, 767, 850, 1279
Asp718I	GGTACC	1 cut(s)	1038
AspS9I	GGNCC	2 cut(s)	918, 937
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	937
AxyI	CCTNAGG	1 cut(s)	914
BaeGI	GKGCMC	2 cut(s)	194, 759
BalI	TGGCCA	1 cut(s)	1361
BamHI	GGATCC	3 cut(s)	9, 618, 1228
BanI	GGYRCC	1 cut(s)	1038
BbrPI	CACGTG	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	307, 354
Bbv12I	GWGCWC	2 cut(s)	695, 759
BbvI	GCAGC	8 cut(s)	94, 116, 213, 710, 713, 779, 862, 1291
BccI	CCATC	4 cut(s)	37, 470, 549, 905
BceAI	ACGGC	1 cut(s)	1355
BciT130I	CCWGG	1 cut(s)	1158
BcoDI	GTCTC	3 cut(s)	159, 561, 903
BfaI	CTAG	3 cut(s)	290, 831, 1298
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	8 cut(s)	105, 108, 227, 724, 727, 768, 851, 1280
BlsI	GCNGC	8 cut(s)	106, 109, 228, 725, 728, 769, 852, 1281
Bme1390I	CCNGG	1 cut(s)	1158
Bme18I	GGWCC	1 cut(s)	937
BmgT120I	GGNCC	2 cut(s)	918, 937
BmiI	GGNNCC	4 cut(s)	11, 620, 1040, 1230
BmrFI	CCNGG	1 cut(s)	1158
BpiI	GAAGAC	2 cut(s)	307, 354
BpmI	CTGGAG	1 cut(s)	667
Bpu10I	CCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	3 cut(s)	1144, 1262, 1305
Bsa29I	ATCGAT	1 cut(s)	1353
BsaAI	YACGTR	2 cut(s)	195, 839
BsaI	GGTCTC	2 cut(s)	159, 903
BsaJI	CCNNGG	2 cut(s)	283, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	973, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	822, 1303
Bse1I	ACTGG	2 cut(s)	1210, 1308
Bse21I	CCTNAGG	1 cut(s)	914
BseBI	CCWGG	1 cut(s)	1158
BseCI	ATCGAT	1 cut(s)	1353
BseDI	CCNNGG	2 cut(s)	283, 821
BseGI	GGATG	2 cut(s)	241, 541
BseLI	CCNNNNNNNGG	2 cut(s)	822, 1303
BseMII	CTCAG	3 cut(s)	260, 928, 984
BseNI	ACTGG	2 cut(s)	1210, 1308
BseRI	GAGGAG	1 cut(s)	1259
BseSI	GKGCMC	2 cut(s)	194, 759
BseXI	GCAGC	8 cut(s)	94, 116, 213, 710, 713, 779, 862, 1291
BshFI	GGCC	3 cut(s)	919, 1342, 1361
BshNI	GGYRCC	1 cut(s)	1038
BshVI	ATCGAT	1 cut(s)	1353
BsiHKAI	GWGCWC	2 cut(s)	695, 759
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	822, 1303
BsmAI	GTCTC	3 cut(s)	159, 561, 903
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	3 cut(s)	919, 1342, 1361
Bso31I	GGTCTC	2 cut(s)	159, 903
Bsp1286I	GDGCHC	3 cut(s)	194, 695, 759
Bsp143I	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
Bsp19I	CCATGG	1 cut(s)	821
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	3 cut(s)	919, 1342, 1361
BspCNI	CTCAG	3 cut(s)	259, 927, 985
BspDI	ATCGAT	1 cut(s)	1353
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	4 cut(s)	11, 620, 1040, 1230
BspPI	GGATC	7 cut(s)	4, 17, 465, 613, 626, 1223, 1236
BspT107I	GGYRCC	1 cut(s)	1038
BspTNI	GGTCTC	2 cut(s)	159, 903
BsrI	ACTGG	2 cut(s)	1210, 1308
BssECI	CCNNGG	2 cut(s)	283, 821
BssMI	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	821
Bst1107I	GTATAC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	1158
Bst4CI	ACNGT	2 cut(s)	208, 717
BstAPI	GCANNNNNTGC	1 cut(s)	1285
BstBAI	YACGTR	2 cut(s)	195, 839
BstC8I	GCNNGC	4 cut(s)	102, 855, 921, 1269
BstDEI	CTNAG	4 cut(s)	246, 730, 914, 993
BstDSI	CCRYGG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	241, 541
BstKTI	GATC	9 cut(s)	12, 182, 202, 460, 621, 645, 655, 1231, 1353
BstMAI	GTCTC	3 cut(s)	159, 561, 903
BstMBI	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
BstMWI	GCNNNNNNNGC	1 cut(s)	1285
BstNI	CCWGG	1 cut(s)	1158
BstNSI	RCATGY	4 cut(s)	168, 927, 1007, 1199
BstSCI	CCNGG	1 cut(s)	1156
BstSLI	GKGCMC	2 cut(s)	194, 759
BstSNI	TACGTA	1 cut(s)	839
BstV1I	GCAGC	8 cut(s)	94, 116, 213, 710, 713, 779, 862, 1291
BstV2I	GAAGAC	2 cut(s)	307, 354
BstX2I	RGATCY	5 cut(s)	9, 457, 618, 642, 1228
BstYI	RGATCY	5 cut(s)	9, 457, 618, 642, 1228
BstZ17I	GTATAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	1353
Bsu36I	CCTNAGG	1 cut(s)	914
BsuRI	GGCC	3 cut(s)	919, 1342, 1361
BsuTUI	ATCGAT	1 cut(s)	1353
BtgI	CCRYGG	1 cut(s)	821
BtsCI	GGATG	2 cut(s)	241, 541
BtsIMutI	CAGTG	2 cut(s)	360, 1301
Cac8I	GCNNGC	4 cut(s)	102, 855, 921, 1269
CaiI	CAGNNNCTG	1 cut(s)	1216
CciI	TCATGA	1 cut(s)	1012
Cfr13I	GGNCC	2 cut(s)	918, 937
ClaI	ATCGAT	1 cut(s)	1353
Csp6I	GTAC	4 cut(s)	271, 388, 1039, 1373
CviQI	GTAC	4 cut(s)	271, 388, 1039, 1373
DdeI	CTNAG	4 cut(s)	246, 730, 914, 993
DpnI	GATC	9 cut(s)	11, 181, 201, 459, 620, 644, 654, 1230, 1352
DpnII	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
EaeI	YGGCCR	2 cut(s)	1340, 1359
Eco105I	TACGTA	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	821
Eco31I	GGTCTC	2 cut(s)	159, 903
Eco47I	GGWCC	1 cut(s)	937
Eco57I	CTGAAG	2 cut(s)	7, 810
Eco72I	CACGTG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	1156
EcoT14I	CCWWGG	1 cut(s)	821
EcoT22I	ATGCAT	2 cut(s)	66, 865
ErhI	CCWWGG	1 cut(s)	821
Esp3I	CGTCTC	1 cut(s)	561
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	799
FauI	CCCGC	1 cut(s)	928
FauNDI	CATATG	1 cut(s)	1183
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	8 cut(s)	105, 108, 227, 724, 727, 768, 851, 1280
FokI	GGATG	2 cut(s)	228, 528
Fsp4HI	GCNGC	8 cut(s)	105, 108, 227, 724, 727, 768, 851, 1280
FspBI	CTAG	3 cut(s)	290, 831, 1298
GluI	GCNGC	8 cut(s)	105, 108, 227, 724, 727, 768, 851, 1280
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	3 cut(s)	919, 1342, 1361
HindIII	AAGCTT	1 cut(s)	1137
HinfI	GANTC	3 cut(s)	27, 300, 812
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	4 cut(s)	211, 757, 1130, 1334
Hpy188I	TCNGA	7 cut(s)	26, 184, 249, 462, 790, 1204, 1218
Hpy188III	TCNNGA	7 cut(s)	7, 646, 665, 992, 1013, 1123, 1322
Hpy8I	GTNNAC	4 cut(s)	211, 757, 1130, 1334
Hpy99I	CGWCG	1 cut(s)	1341
HpyAV	CCTTC	2 cut(s)	555, 785
HpyCH4III	ACNGT	2 cut(s)	208, 717
HpyCH4IV	ACGT	2 cut(s)	194, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1285
HpyF3I	CTNAG	4 cut(s)	246, 730, 914, 993
HpySE526I	ACGT	2 cut(s)	194, 838
KpnI	GGTACC	1 cut(s)	1042
Kzo9I	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
Lsp1109I	GCAGC	8 cut(s)	94, 116, 213, 710, 713, 779, 862, 1291
MaeI	CTAG	3 cut(s)	290, 831, 1298
MaeII	ACGT	2 cut(s)	194, 838
MaeIII	GTNAC	3 cut(s)	665, 962, 1067
MalI	GATC	9 cut(s)	11, 181, 201, 459, 620, 644, 654, 1230, 1352
MboI	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
MboII	GAAGA	5 cut(s)	262, 307, 359, 1175, 1271
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	5 cut(s)	9, 457, 618, 642, 1228
MhlI	GDGCHC	3 cut(s)	194, 695, 759
MlsI	TGGCCA	1 cut(s)	1361
MluCI	AATT	7 cut(s)	260, 327, 338, 446, 956, 1190, 1377
MluNI	TGGCCA	1 cut(s)	1361
MlyI	GAGTC	1 cut(s)	821
Mox20I	TGGCCA	1 cut(s)	1361
Mph1103I	ATGCAT	2 cut(s)	66, 865
MscI	TGGCCA	1 cut(s)	1361
MseI	TTAA	3 cut(s)	50, 141, 612
MslI	CAYNNNNRTG	3 cut(s)	702, 762, 1312
Msp20I	TGGCCA	1 cut(s)	1361
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	1158
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	1158
MwoI	GCNNNNNNNGC	1 cut(s)	1285
NcoI	CCATGG	1 cut(s)	821
NdeI	CATATG	1 cut(s)	1183
NdeII	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
NlaIV	GGNNCC	4 cut(s)	11, 620, 1040, 1230
NmeAIII	GCCGAG	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	665
NsiI	ATGCAT	2 cut(s)	66, 865
NspI	RCATGY	4 cut(s)	168, 927, 1007, 1199
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	2 cut(s)	164, 1003
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	27, 300
PkrI	GCNGC	8 cut(s)	106, 109, 228, 725, 728, 769, 852, 1281
PleI	GAGTC	1 cut(s)	820
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	195, 839
PscI	ACATGT	2 cut(s)	164, 1003
PsiI	TTATAA	2 cut(s)	674, 1095
Psp6I	CCWGG	1 cut(s)	1156
PspCI	CACGTG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	1156
PspN4I	GGNNCC	4 cut(s)	11, 620, 1040, 1230
PspPI	GGNCC	2 cut(s)	918, 937
PstNI	CAGNNNCTG	1 cut(s)	1216
PsuI	RGATCY	5 cut(s)	9, 457, 618, 642, 1228
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	4 cut(s)	272, 389, 1040, 1374
RsaNI	GTAC	4 cut(s)	271, 388, 1039, 1373
RseI	CAYNNNNRTG	3 cut(s)	702, 762, 1312
SaqAI	TTAA	3 cut(s)	50, 141, 612
SatI	GCNGC	8 cut(s)	105, 108, 227, 724, 727, 768, 851, 1280
Sau3AI	GATC	9 cut(s)	9, 179, 199, 457, 618, 642, 652, 1228, 1350
Sau96I	GGNCC	2 cut(s)	918, 937
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	1158
SduI	GDGCHC	3 cut(s)	194, 695, 759
SinI	GGWCC	1 cut(s)	937
SmiMI	CAYNNNNRTG	3 cut(s)	702, 762, 1312
SmlI	CTYRAG	3 cut(s)	1123, 1241, 1320
SmoI	CTYRAG	3 cut(s)	1123, 1241, 1320
SnaBI	TACGTA	1 cut(s)	839
Sse9I	AATT	7 cut(s)	260, 327, 338, 446, 956, 1190, 1377
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	3 cut(s)	290, 831, 1298
StyD4I	CCNGG	1 cut(s)	1156
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	2 cut(s)	208, 717
TaiI	ACGT	2 cut(s)	197, 841
TaqI	TCGA	1 cut(s)	1353
TasI	AATT	7 cut(s)	260, 327, 338, 446, 956, 1190, 1377
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	27, 300
Tru1I	TTAA	3 cut(s)	50, 141, 612
Tru9I	TTAA	3 cut(s)	50, 141, 612
TscAI	CASTG	2 cut(s)	367, 1308
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	8 cut(s)	104, 107, 226, 723, 726, 767, 850, 1279
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	272, 528, 618, 893
TspRI	CASTG	2 cut(s)	367, 1308
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	937
XceI	RCATGY	4 cut(s)	168, 927, 1007, 1199
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	3 cut(s)	290, 831, 1298
Zsp2I	ATGCAT	2 cut(s)	66, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.