Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019954

Physical Location & Seq

Genomic Coordinates Forward (+)

25176923 .. 25184509

Gene Structure 7587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG161300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAGCTATCGGTGGTGGAGTCGAAGCTGGCGAAGTTGCTTCCAAAGGAGAAGAGTCCGAATAAAGAGGATCTAGGGTGTGGGCTGATGTTGAAGCTAGACTACGAAGACGTTTTGAGTGCTTGGTCAGACAAAGCGTCGTCGTTTTCGGAGGATTTGCAGGGCGGCGCTGATGGAAACCATCACCATGGGCGACGACACTCCTGCCGCAACGGCGTGGCGGCGGGGGCAGTTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTACCTTCGCCCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCGACGCGAAGCCTGCACAGTCGAACGTAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTCGGTATCTGTCCAGAGGTAGCAAAGAAAGGAGATGTTAGTCGGTGTCCATATAATGATAAGTGCCGCTACAGCCACGACATAGAAGCCTATAAGGCTCAGAAACCTGAGGATATAGAGGGAGAATGTCCTTTTATGAGCCCCATGTCCTTATGGTTTGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

203

Amino Acids

22.68

Weight (kDa)

8.7

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	149 - 182	3.1e-11	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268421 RchiOBHm_Chr6g0271631
rosa_laevigata	RLG00000013912
rosa_multiflora	Rmu_sc0008184.1_g000008
rosa_rugosa	Rorug06G0042000
rosa_samantha	Rh6AG161300 Rh6BG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	359, 426
AciI	CCGC	7 cut(s)	168, 211, 224, 227, 403, 424, 511
AclWI	GGATC	2 cut(s)	81, 336
AcyI	GRCGYC	2 cut(s)	245, 339
AfaI	GTAC	2 cut(s)	293, 432
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	97
AhdI	GACNNNNNGTC	1 cut(s)	139
AluBI	AGCT	5 cut(s)	10, 31, 100, 256, 409
AluI	AGCT	5 cut(s)	10, 31, 100, 256, 409
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	81, 336
ApeKI	GCWGC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	179, 292
AxyI	CCTNAGG	1 cut(s)	552
BanII	GRGCYC	2 cut(s)	258, 587
BarI	GAAGNNNNNNTAC	4 cut(s)	89, 121, 275, 307
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	3 cut(s)	170, 192, 278
BceAI	ACGGC	2 cut(s)	232, 326
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BfaI	CTAG	2 cut(s)	77, 101
BfmI	CTRYAG	1 cut(s)	514
BfoI	RGCGCY	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	410
BglI	GCCNNNNNGGC	2 cut(s)	216, 539
BisI	GCNGC	7 cut(s)	169, 211, 225, 404, 407, 424, 511
BlsI	GCNGC	7 cut(s)	170, 212, 226, 405, 408, 425, 512
BmeRI	GACNNNNNGTC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	117
BsaHI	GRCGYC	2 cut(s)	245, 339
BsaJI	CCNNGG	2 cut(s)	190, 445
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bse21I	CCTNAGG	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	190, 445
BseMII	CTCAG	2 cut(s)	543, 557
BseRI	GAGGAG	2 cut(s)	266, 294
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	359, 426
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	248, 278
Bsp1286I	GDGCHC	2 cut(s)	258, 587
Bsp143I	GATC	2 cut(s)	73, 328
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	7 cut(s)	168, 211, 224, 227, 403, 424, 511
BspCNI	CTCAG	2 cut(s)	544, 556
BspFNI	CGCG	2 cut(s)	359, 426
BspPI	GGATC	2 cut(s)	81, 336
BspTI	CTTAAG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	190, 445
BssMI	GATC	2 cut(s)	73, 328
BssNI	GRCGYC	2 cut(s)	245, 339
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	291, 372
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	2 cut(s)	245, 339
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	33, 366
BstDEI	CTNAG	3 cut(s)	324, 543, 552
BstDSI	CCRYGG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	359, 426
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	76, 331
BstMBI	GATC	2 cut(s)	73, 328
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 230, 253, 365, 412, 516, 539
BstSFI	CTRYAG	1 cut(s)	514
BstUI	CGCG	2 cut(s)	359, 426
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	33, 366
CfoI	GCGC	1 cut(s)	173
CseI	GACGC	4 cut(s)	129, 253, 347, 365
Csp6I	GTAC	2 cut(s)	292, 431
CviAII	CATG	3 cut(s)	191, 589, 607
CviQI	GTAC	2 cut(s)	292, 431
DdeI	CTNAG	3 cut(s)	324, 543, 552
DpnI	GATC	2 cut(s)	75, 330
DpnII	GATC	2 cut(s)	73, 328
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	258, 587
Eco53kI	GAGCTC	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	258, 587
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	194, 592, 610
FatI	CATG	3 cut(s)	190, 588, 606
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	7 cut(s)	169, 211, 225, 404, 407, 424, 511
FriOI	GRGCYC	2 cut(s)	258, 587
Fsp4HI	GCNGC	7 cut(s)	169, 211, 225, 404, 407, 424, 511
FspBI	CTAG	2 cut(s)	77, 101
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	7 cut(s)	169, 211, 225, 404, 407, 424, 511
HaeII	RGCGCY	1 cut(s)	174
HapII	CCGG	2 cut(s)	248, 278
HgaI	GACGC	4 cut(s)	129, 253, 347, 365
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	2 cut(s)	245, 339
Hin1II	CATG	3 cut(s)	194, 592, 610
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	23, 58
HpaII	CCGG	2 cut(s)	248, 278
HphI	GGTGA	2 cut(s)	179, 292
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	5 cut(s)	63, 133, 154, 314, 546
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	5 cut(s)	145, 148, 201, 341, 359
HpyAV	CCTTC	2 cut(s)	305, 379
HpyCH4III	ACNGT	2 cut(s)	291, 372
HpyCH4IV	ACGT	2 cut(s)	114, 378
HpyCH4V	TGCA	2 cut(s)	163, 368
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 230, 253, 365, 412, 516, 539
HpyF3I	CTNAG	3 cut(s)	324, 543, 552
HpySE526I	ACGT	2 cut(s)	114, 378
Hsp92I	GRCGYC	2 cut(s)	245, 339
Hsp92II	CATG	3 cut(s)	194, 592, 610
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	73, 328
LmnI	GCTCC	2 cut(s)	253, 280
LpnPI	CCDG	8 cut(s)	17, 149, 220, 261, 291, 378, 471, 564
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	77, 101
MaeII	ACGT	2 cut(s)	114, 378
MalI	GATC	2 cut(s)	75, 330
MboI	GATC	2 cut(s)	73, 328
MboII	GAAGA	4 cut(s)	67, 122, 295, 403
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	258, 587
MlyI	GAGTC	2 cut(s)	32, 67
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	248, 278
MvnI	CGCG	2 cut(s)	359, 426
MwoI	GCNNNNNNNGC	7 cut(s)	216, 230, 253, 365, 412, 516, 539
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	73, 328
NlaIII	CATG	3 cut(s)	194, 592, 610
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	170, 212, 226, 405, 408, 425, 512
PleI	GAGTC	2 cut(s)	31, 66
PpsI	GAGTC	2 cut(s)	31, 66
Psp124BI	GAGCTC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	293, 432
RsaNI	GTAC	2 cut(s)	292, 431
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	7 cut(s)	169, 211, 225, 404, 407, 424, 511
Sau3AI	GATC	2 cut(s)	73, 328
SchI	GAGTC	2 cut(s)	32, 67
SduI	GDGCHC	2 cut(s)	258, 587
SfcI	CTRYAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SsiI	CCGC	7 cut(s)	168, 211, 224, 227, 403, 424, 511
SspMI	CTAG	2 cut(s)	77, 101
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	291, 372
TaiI	ACGT	2 cut(s)	117, 381
TaqI	TCGA	2 cut(s)	26, 374
TauI	GCSGC	6 cut(s)	171, 213, 227, 406, 426, 513
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	410
XspI	CTAG	2 cut(s)	77, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.