RchiOBHm_Chr6g0273791

Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
34780808 .. 34783928
3121 bp
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UTR
Exon/CDS
Intron
PRQ24561

Sequence Viewer

Length: 312 bp
ATGCTTATCAGATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCGTTGGTGGTGTACAGATTAGTCAGTGTTGGTGGTGTACAGATCAGTCAGTCAATTACTATTGATAGGCAAATGAAAAAATATGAGGTTCCAAGAATTGCATTTACAAACAAACTTGATCGAATAGGAGCAGATCAATGTAAAGTTCTGAATCAGGTGCCTTATGTCAATCTGTTCATAGCATATTTCCAAATACCTTATGTATGA

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

9.69

Isoelectric Point (pI)

25.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019956)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0273791
rosa_multiflora Rmu_ssc0000322.1_g000016
rosa_roxburghii Rroxscaffold_6G00393050
rosa_samantha Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AfaI GTAC 2 cut(s) 119, 144
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 262
BccI CCATC 2 cut(s) 76, 97
BclI TGATCA 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 87, 195, 264
BseGI GGATG 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 262
Bsp1407I TGTACA 2 cut(s) 117, 142
Bsp143I GATC 4 cut(s) 33, 147, 223, 238
BspLI GGNNCC 3 cut(s) 87, 195, 264
BspT107I GGYRCC 1 cut(s) 262
BsrGI TGTACA 2 cut(s) 117, 142
BssMI GATC 4 cut(s) 33, 147, 223, 238
BstAUI TGTACA 2 cut(s) 117, 142
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 4 cut(s) 36, 150, 226, 241
BstMBI GATC 4 cut(s) 33, 147, 223, 238
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 136
Csp6I GTAC 2 cut(s) 118, 143
CviJI RGCY 2 cut(s) 67, 88
CviKI_1 RGCY 2 cut(s) 67, 88
CviQI GTAC 2 cut(s) 118, 143
DpnI GATC 4 cut(s) 35, 149, 225, 240
DpnII GATC 4 cut(s) 33, 147, 223, 238
FaiI YATR 6 cut(s) 189, 270, 284, 289, 306, 310
FbaI TGATCA 1 cut(s) 33
FokI GGATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 256
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 2 cut(s) 118, 143
Hpy188I TCNGA 2 cut(s) 11, 255
Hpy188III TCNNGA 2 cut(s) 60, 79
Hpy8I GTNNAC 2 cut(s) 118, 143
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 147, 223, 238
LmnI GCTCC 2 cut(s) 85, 233
LpnPI CCDG 2 cut(s) 44, 245
MaeII ACGT 1 cut(s) 38
MalI GATC 4 cut(s) 35, 149, 225, 240
MboI GATC 4 cut(s) 33, 147, 223, 238
MluCI AATT 2 cut(s) 159, 201
MnlI CCTC 2 cut(s) 48, 184
MseI TTAA 1 cut(s) 14
NdeII GATC 4 cut(s) 33, 147, 223, 238
NlaIV GGNNCC 3 cut(s) 87, 195, 264
PfeI GAWTC 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 87, 195, 264
RsaI GTAC 2 cut(s) 119, 144
RsaNI GTAC 2 cut(s) 118, 143
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 4 cut(s) 33, 147, 223, 238
SetI ASST 6 cut(s) 41, 59, 69, 195, 264, 304
SgeI CNNG 9 cut(s) 43, 49, 72, 85, 91, 106, 210, 233, 272
Sse9I AATT 2 cut(s) 159, 201
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 59, 226
TasI AATT 2 cut(s) 159, 201
TatI WGTACW 2 cut(s) 117, 142
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 194, 271
TspRI CASTG 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.