Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Forward (+)

27582113 .. 27584578

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATTCCATGGATTTTTTTGGTTTGGGGGGAGAAAGGAATTACCATTCAGTTTACTGCACTTGGAATGCTTATCAGATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCGTTGGTGGTGTACAGATCAGTCAGTCAATTACTGTTGATAGGCAAATGAAAAAATACGAGGTTCCAAGAATTGTATTTACAAACAAACTTGATCGAATAGGAGCAGATCAATGGAAAGTTCTGAATCAGAGGAACTACATGCCGAATAGGAAGTTCATGGTTCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

114

Amino Acids

13.25

Weight (kDa)

6.1

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	16 - 101	2.1e-22	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	106
BccI	CCATC	2 cut(s)	143, 164
BclI	TGATCA	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	154, 237, 336
BsaJI	CCNNGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	100, 189, 265, 280
Bsp19I	CCATGG	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	154, 237, 336
BsrGI	TGTACA	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	100, 189, 265, 280
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	4 cut(s)	103, 192, 268, 283
BstMBI	GATC	4 cut(s)	100, 189, 265, 280
BstNSI	RCATGY	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	3 cut(s)	10, 313, 331
CviJI	RGCY	2 cut(s)	134, 155
CviKI_1	RGCY	2 cut(s)	134, 155
CviQI	GTAC	1 cut(s)	185
DpnI	GATC	4 cut(s)	102, 191, 267, 282
DpnII	GATC	4 cut(s)	100, 189, 265, 280
Eco130I	CCWWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	13, 316, 334
FaiI	YATR	3 cut(s)	11, 314, 332
FatI	CATG	3 cut(s)	9, 312, 330
FbaI	TGATCA	1 cut(s)	100
FokI	GGATG	1 cut(s)	143
Hin1II	CATG	3 cut(s)	13, 316, 334
HinfI	GANTC	2 cut(s)	5, 298
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	55, 185
Hpy188I	TCNGA	3 cut(s)	78, 297, 303
Hpy188III	TCNNGA	3 cut(s)	127, 146, 338
Hpy8I	GTNNAC	2 cut(s)	55, 185
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	13, 316, 334
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 189, 265, 280
LmnI	GCTCC	2 cut(s)	152, 275
LpnPI	CCDG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	105
MalI	GATC	4 cut(s)	102, 191, 267, 282
MboI	GATC	4 cut(s)	100, 189, 265, 280
MluCI	AATT	3 cut(s)	40, 201, 243
MnlI	CCTC	3 cut(s)	115, 226, 297
MseI	TTAA	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	100, 189, 265, 280
NlaIII	CATG	3 cut(s)	13, 316, 334
NlaIV	GGNNCC	3 cut(s)	154, 237, 336
NspI	RCATGY	1 cut(s)	316
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	5, 298
PspN4I	GGNNCC	3 cut(s)	154, 237, 336
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	100, 189, 265, 280
SetI	ASST	4 cut(s)	108, 126, 136, 237
Sse9I	AATT	3 cut(s)	40, 201, 243
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	126, 268
TasI	AATT	3 cut(s)	40, 201, 243
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	5, 298
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	236, 319
XceI	RCATGY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.