Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Reverse (-)

33408542 .. 33410783

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGTCGCTGCCAAAATGGATTCCATGGATTTTTTTGGTTTGGGGGGGAGAAAGGAATTACCATTCAGTTTACTGCACTTGGAATGCTTATCAGATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCGTTGGTGGTGTACAGATTAGTCAGTGTTGGTGGTGTACAGATCAGTCAGTCAATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

84

Amino Acids

9.78

Weight (kDa)

4.73

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	22 - 70	3.5e-13	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	204, 229
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	124
BccI	CCATC	2 cut(s)	161, 182
BclI	TGATCA	1 cut(s)	118
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	91
Bsp1407I	TGTACA	2 cut(s)	202, 227
Bsp143I	GATC	2 cut(s)	118, 232
Bsp19I	CCATGG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	172
BsrGI	TGTACA	2 cut(s)	202, 227
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	118, 232
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	2 cut(s)	202, 227
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	121, 235
BstMBI	GATC	2 cut(s)	118, 232
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	203, 228
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	2 cut(s)	152, 173
CviKI_1	RGCY	2 cut(s)	152, 173
CviQI	GTAC	2 cut(s)	203, 228
DpnI	GATC	2 cut(s)	120, 234
DpnII	GATC	2 cut(s)	118, 232
Eco130I	CCWWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	30
FaiI	YATR	1 cut(s)	28
FatI	CATG	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	30
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	73, 203, 228
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	145, 164
Hpy8I	GTNNAC	3 cut(s)	73, 203, 228
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 232
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	120, 234
MboI	GATC	2 cut(s)	118, 232
MluCI	AATT	2 cut(s)	58, 244
MnlI	CCTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	118, 232
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	204, 229
RsaNI	GTAC	2 cut(s)	203, 228
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	118, 232
SetI	ASST	3 cut(s)	126, 144, 154
SgeI	CNNG	8 cut(s)	39, 93, 128, 134, 157, 170, 176, 191
Sse9I	AATT	2 cut(s)	58, 244
StyI	CCWWGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	58, 244
TatI	WGTACW	2 cut(s)	202, 227
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	10
TspRI	CASTG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.