Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Forward (+)

12829908 .. 12831511

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAATCTCATGAAAAGGAGTTTTCTAGAATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCATTGGTGGTGTACAGATCAGTCAGTCAATTACTGTTGATAGGCAAATGAAAATATACGAGGTTCCAAGAACTGCATTTGCAAACAAACTTGATCGAATAGTAGCAGATCAATGGAAAGTTCTGAATCAGAGTGGATGGGCAATTACAAAACATAACGTGAATAACGTGAAGTCACGTAAGGTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

9.25

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	7 - 82	2.1e-17	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	58
BccI	CCATC	3 cut(s)	95, 116, 255
BclI	TGATCA	1 cut(s)	52
BfaI	CTAG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	106, 189
BsaAI	YACGTR	1 cut(s)	302
BseGI	GGATG	2 cut(s)	108, 266
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	52, 141, 217, 232
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	106, 189
BsrGI	TGTACA	1 cut(s)	136
BssMI	GATC	4 cut(s)	52, 141, 217, 232
Bst4CI	ACNGT	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	108, 266
BstKTI	GATC	4 cut(s)	55, 144, 220, 235
BstMBI	GATC	4 cut(s)	52, 141, 217, 232
BtsCI	GGATG	2 cut(s)	108, 266
CciI	TCATGA	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	2 cut(s)	86, 107
CviKI_1	RGCY	2 cut(s)	86, 107
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	4 cut(s)	54, 143, 219, 234
DpnII	GATC	4 cut(s)	52, 141, 217, 232
FaeI	CATG	1 cut(s)	14
FaiI	YATR	3 cut(s)	12, 181, 279
FatI	CATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	52
FokI	GGATG	2 cut(s)	95, 273
FspBI	CTAG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	14
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	249, 255
Hpy188III	TCNNGA	4 cut(s)	11, 27, 79, 98
Hpy8I	GTNNAC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	5 cut(s)	57, 282, 291, 301, 311
HpyCH4V	TGCA	2 cut(s)	200, 206
HpySE526I	ACGT	5 cut(s)	57, 282, 291, 301, 311
Hsp92II	CATG	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 141, 217, 232
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	1 cut(s)	63
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	5 cut(s)	57, 282, 291, 301, 311
MaeIII	GTNAC	2 cut(s)	297, 307
MalI	GATC	4 cut(s)	54, 143, 219, 234
MboI	GATC	4 cut(s)	52, 141, 217, 232
MluCI	AATT	3 cut(s)	30, 153, 267
MnlI	CCTC	2 cut(s)	67, 178
MseI	TTAA	1 cut(s)	33
NdeII	GATC	4 cut(s)	52, 141, 217, 232
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	106, 189
NmuCI	GTSAC	2 cut(s)	297, 307
PagI	TCATGA	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	106, 189
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	4 cut(s)	52, 141, 217, 232
SetI	ASST	9 cut(s)	60, 78, 88, 189, 285, 294, 304, 309, 314
Sse9I	AATT	3 cut(s)	30, 153, 267
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	5 cut(s)	60, 285, 294, 304, 314
TaqI	TCGA	2 cut(s)	78, 220
TasI	AATT	3 cut(s)	30, 153, 267
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	297, 307
Tsp45I	GTSAC	2 cut(s)	297, 307
TspDTI	ATGAA	3 cut(s)	17, 27, 188
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.