Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Reverse (-)

32409465 .. 32412217

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG195600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGCTTGCCTCGTCGGAGATTTGCCTCTCGGATCTCCAATACGGCGTGCCGTTTCAGGGCTTCGAATATCGAGAGAATTCTCTACTACACCGGAAAGATCCACGAGGTCAGAGGCCGAGATGGCGTCGCTGCCAAAATGGATTCCATGGACTTTTTTGGTTTGGGGGGAGAAAGGAATTACCATTCAGTTTACTGCACTTGGAATGCTTATCAGATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCATGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCGTTGGTGGTGTACAGATCAGTCAGTCAATTACTGTTGATAGGCAAAAGAAAAAATACGAGGTTCCAAGAATTGCATTTACAAACAAACTTGATCGAATAGGAGCAGATCAATGGAAAGTTCTGAATCAGAGGAACTACATGCCGAATAGGAAGTTCATGGTTCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

160

Amino Acids

18.52

Weight (kDa)

9.41

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	24 - 147	1.3e-22	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	41, 94
AcsI	RAATTY	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	2 cut(s)	41, 94
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	116, 281, 302
BceAI	ACGGC	2 cut(s)	36, 60
BclI	TGATCA	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmiI	GGNNCC	3 cut(s)	292, 375, 474
Bpu14I	TTCGAA	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	292, 375, 474
BspPI	GGATC	2 cut(s)	41, 94
BspT104I	TTCGAA	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	8, 49
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	6 cut(s)	36, 102, 241, 330, 406, 421
BstMBI	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNSI	RCATGY	2 cut(s)	281, 454
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	33, 99
BstYI	RGATCY	2 cut(s)	33, 99
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	8, 49
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	148, 278, 451, 469
CviJI	RGCY	4 cut(s)	62, 117, 272, 293
CviKI_1	RGCY	4 cut(s)	62, 117, 272, 293
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	6 cut(s)	35, 101, 240, 329, 405, 420
DpnII	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
Eco130I	CCWWGG	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	151, 281, 454, 472
FaiI	YATR	4 cut(s)	149, 279, 452, 470
FatI	CATG	4 cut(s)	147, 277, 450, 468
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	151, 281, 454, 472
HinfI	GANTC	2 cut(s)	143, 436
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	193, 323
Hpy188I	TCNGA	6 cut(s)	18, 33, 113, 216, 435, 441
Hpy188III	TCNNGA	4 cut(s)	73, 265, 284, 476
Hpy8I	GTNNAC	2 cut(s)	193, 323
Hpy99I	CGWCG	2 cut(s)	18, 131
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	198, 277, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	151, 281, 454, 472
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
LmnI	GCTCC	2 cut(s)	290, 413
LpnPI	CCDG	3 cut(s)	43, 106, 249
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	243
MalI	GATC	6 cut(s)	35, 101, 240, 329, 405, 420
MboI	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
MflI	RGATCY	2 cut(s)	33, 99
MluCI	AATT	4 cut(s)	78, 178, 339, 381
MnlI	CCTC	7 cut(s)	21, 37, 100, 107, 253, 364, 435
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
NlaIII	CATG	4 cut(s)	151, 281, 454, 472
NlaIV	GGNNCC	3 cut(s)	292, 375, 474
NmeAIII	GCCGAG	1 cut(s)	143
NspI	RCATGY	2 cut(s)	281, 454
NspV	TTCGAA	1 cut(s)	65
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	143, 436
PkrI	GCNGC	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	292, 375, 474
PsuI	RGATCY	2 cut(s)	33, 99
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	6 cut(s)	33, 99, 238, 327, 403, 418
SetI	ASST	5 cut(s)	111, 246, 264, 274, 375
SfuI	TTCGAA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	78, 178, 339, 381
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	65, 72, 264, 406
TasI	AATT	4 cut(s)	78, 178, 339, 381
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	143, 436
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	457
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	2 cut(s)	281, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.