Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Reverse (-)

34384054 .. 34384356

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAAGGGAAAAGATGTTGTTGCAGTCCTTTCATATCATTCGAATCTCTGATGTTGTTGCAGTCCTTTCATATCATTAGAATCTCTTATAAAACTGGAACTTCGCTATTGCAGATTAACATTATTGAAACCCCTGATCACGTTGATTTCACCATTGAGGTCGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCATTTGTAGCGTTGGTGGTTTACAGATCAGTCAGTCAATTACTGTTGATGGGCAAATGAAAAAAATACGAGGTTCCAAGAATTGCATTTACAAACAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

100

Amino Acids

11.18

Weight (kDa)

8.93

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	31 - 86	3.9e-11	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	42
BccI	CCATC	3 cut(s)	179, 200, 242
BclI	TGATCA	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	190, 274
Bpu14I	TTCGAA	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	136, 225
BspLI	GGNNCC	2 cut(s)	190, 274
BspT104I	TTCGAA	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	136, 225
Bst4CI	ACNGT	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	139, 228
BstMBI	GATC	2 cut(s)	136, 225
BtsCI	GGATG	1 cut(s)	192
CviJI	RGCY	2 cut(s)	170, 191
CviKI_1	RGCY	2 cut(s)	170, 191
DpnI	GATC	2 cut(s)	138, 227
DpnII	GATC	2 cut(s)	136, 225
FaiI	YATR	3 cut(s)	35, 72, 90
FbaI	TGATCA	1 cut(s)	136
FokI	GGATG	1 cut(s)	179
HinfI	GANTC	2 cut(s)	44, 81
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	163, 182
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	24, 61, 112, 285
HpySE526I	ACGT	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 225
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	2 cut(s)	81, 147
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	138, 227
MboI	GATC	2 cut(s)	136, 225
MluCI	AATT	2 cut(s)	237, 280
MnlI	CCTC	2 cut(s)	151, 263
MseI	TTAA	1 cut(s)	117
NdeII	GATC	2 cut(s)	136, 225
NlaIV	GGNNCC	2 cut(s)	190, 274
NspV	TTCGAA	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	44, 81
PsiI	TTATAA	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	190, 274
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	136, 225
SetI	ASST	4 cut(s)	144, 162, 172, 274
SfuI	TTCGAA	1 cut(s)	42
SgeI	CNNG	9 cut(s)	108, 146, 152, 175, 188, 194, 209, 281, 289
Sse9I	AATT	2 cut(s)	237, 280
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	42, 162
TasI	AATT	2 cut(s)	237, 280
TfiI	GAWTC	2 cut(s)	44, 81
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TspDTI	ATGAA	4 cut(s)	17, 22, 59, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.