RchiOBHm_Chr6g0285561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
48915846 .. 48921994
6149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25614

Sequence Viewer

Length: 1824 bp
ATGAGCGAAAGTGAGATTCCGTCTCTGATCTCTCTGTGCATAGACGCAATCAAAACAGACCTGCTTCGCGGAGATGATCTTCTTCCGATTATCCATGAGCTTCCTTCGGACTTGCTCCATCTTCTGGTCTCGCGGTTGCCTCCATTCGCCCTACACAAGCTACAGAGAGCAATGCCTTTTGATGACCGAGAAGACGAGTTTTCTGATGAATGCCTCGGAAATAGTAGAAAGCGAGGAAGGTCTGCAAGGTCAGGGAATTTCAACAAGGCATGGAGAAATTTGTTTAAATCGCGGTGGCCGGAGCTTGGCAGTAGGATTGAACCGCCTGACTGGCAGCAGATCTATTGGGAAACTCATCTGCAAAATTGTCTAGATGAAGTAGCAGAGCTAGCTTCGCTGCCCTCATTTGATGGGTGCCTTGGTGAAATCAAGATTTCAGACTCTTTGTTGGAATTGATAGGTTGTGAGGGTGACATGGCTACTTCAACTTGTGAATATTCCAAACTATATCACCATTGTCTACACTTTGGTTACTTTGTGCAATGCCTGAGACTTCAAAATGTTTTCTGTGATGAAGAAATTTGTCACCTATTGAGGAACAGCAAATTGCAGAGCTTGGAACTAAGGTGGATAAGATCCAAGGAGCATATTACTGGATTATGCAAGCTTCTCAACCAGAACAGTGAAAGTTTAACGTCGCTTGAATTCATTCACTGTACACTTTCTTCAGCTTCTATCACAGCAATTTGTAGTTCTCTATCCCCAAAGAGTTTGCAAGCACACGAAATAAAACACTTCTCAATCAACACAACAAAGTTTCTTGAAACTAACCAATCTTCTGTACCTATCGAACTTGTGTCATTTTTATCTTCAGGAAGGTCCTTGTATTCTTTGAAACTCTCTGACAACCACCTTGGCCAAAAATTTGTGGAAGTGGTATTTAGTACGCTTCTCAATGCTTCGTCCGGTCTATCCATCCTTGACCTTTCAGAAAACAATATATCAGGCTGGCTTTCTGAACTCTATAGGAGATCACGAAATAACCCCCCAACACCTTTAGGAGTTGGAAAGTCCTTGCAATCATTACGGGTGCTCAATTTAAGGGGAAACAATCTCAACAAAGATGATGCAGATGACCTTAGATATGCTCTTGTTCATATGCCTAACTTGGAGGTCCTGGATATGAGTGATAATCCTATTGAGGATGTTGGAATCAGGAGTTTAATTCCCTTTTTTATGGAAGCTTCTGAAAAATGCACTCCCTTTGTTGATTTAATGTTGGAGAACTGTGAGCTTTCCTGTCATGGAGTGACTCAACTTATAAAAACCCTTTCTAGCCTAAGCAGACCATTGAAGTCCCTATCTGTTGCAGATAATGATCTTGGCAGTCAAGTAGCAGCAGCTTTGGGAGAACTTTTGTGCACGTCCATTCAAGTACTCAATGTTGGAGGTATTGGATTAGGTTCATCTGGTTTTCGGGTACTACAAGAAGAACTTACTAAAGAGTTGAAGCTAGTGGAGATCAACATAAGCAAAAACCGCGGAGGAGTTGAAACTGCAAATTTTTTGTCAAAGCTCATGTCAAAGGCTCCCGAACTTGTTACAGTCAATGCTGCATATAATCTTATGCCTGTAGAATCCTTGACCACCATATGCTTTGCCATTAAAAATGCAAAAGGTCTTCGGCATTTGGACTTGAGCGGAAATCCTTGGGACTATAAGCCAGTTTATGCTTCTATGCTTGCCGACATCCAATCTATTGAAAGGCTTGTTTTGATTCTTCCATCTCTTACCCCAGATGCACCCTATGACGCTGACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

67.58

Weight (kDa)

5.36

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
Acc36I ACCTGC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 1701
AccI GTMKAC 1 cut(s) 520
AccII CGCG 4 cut(s) 69, 133, 292, 1542
AciI CCGC 7 cut(s) 69, 133, 292, 323, 1540, 1542, 1701
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 2 cut(s) 296, 916
AcsI RAATTY 6 cut(s) 256, 277, 579, 704, 923, 1561
AcuI CTGAAG 2 cut(s) 711, 855
AfaI GTAC 5 cut(s) 718, 843, 946, 1437, 1482
AfiI CCNNNNNNNGG 2 cut(s) 124, 305
AjiI CACGTC 1 cut(s) 1425
AjnI CCWGG 1 cut(s) 1176
Alw21I GWGCWC 2 cut(s) 1095, 1424
Alw26I GTCTC 3 cut(s) 27, 133, 544
Alw44I GTGCAC 1 cut(s) 1420
AlwI GGATC 1 cut(s) 630
AoxI GGCC 2 cut(s) 296, 916
ApaLI GTGCAC 1 cut(s) 1420
ApeKI GCWGC 5 cut(s) 334, 397, 1397, 1400, 1613
ApoI RAATTY 6 cut(s) 256, 277, 579, 704, 923, 1561
ArsI GACNNNNNNTTYG 4 cut(s) 1553, 1565, 1585, 1597
Asp700I GAANNNNTTC 1 cut(s) 708
AspS9I GGNCC 2 cut(s) 879, 1174
AsuHPI GGTGA 4 cut(s) 434, 482, 503, 578
AsuNHI GCTAGC 1 cut(s) 388
AvaII GGWCC 2 cut(s) 879, 1174
BaeGI GKGCMC 1 cut(s) 1424
BalI TGGCCA 1 cut(s) 918
BanI GGYRCC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 709, 741
BbsI GAAGAC 2 cut(s) 198, 1673
Bbv12I GWGCWC 2 cut(s) 1095, 1424
BbvI GCAGC 5 cut(s) 346, 384, 1409, 1412, 1600
BccI CCATC 4 cut(s) 126, 404, 983, 1792
BciT130I CCWGG 1 cut(s) 1178
BcoDI GTCTC 3 cut(s) 27, 133, 544
BfaI CTAG 4 cut(s) 371, 389, 1335, 1514
BfmI CTRYAG 3 cut(s) 161, 1024, 1632
BfuAI ACCTGC 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 339
BisI GCNGC 5 cut(s) 335, 398, 1398, 1401, 1614
BlsI GCNGC 5 cut(s) 336, 399, 1399, 1402, 1615
BmcAI AGTACT 1 cut(s) 1437
Bme1390I CCNGG 1 cut(s) 1178
Bme18I GGWCC 2 cut(s) 879, 1174
BmgBI CACGTC 1 cut(s) 1425
BmgT120I GGNCC 2 cut(s) 879, 1174
BmiI GGNNCC 2 cut(s) 416, 1590
BmrFI CCNGG 1 cut(s) 1178
BmsI GCATC 2 cut(s) 1117, 1789
BmtI GCTAGC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 198, 1673
Bpu10I CCTNAGC 1 cut(s) 1340
BpuEI CTTGAG 1 cut(s) 1717
BsaBI GATNNNNATC 1 cut(s) 1377
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 6 cut(s) 214, 418, 639, 913, 1540, 1709
BsaWI WCCGGW 1 cut(s) 965
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 305
Bse1I ACTGG 3 cut(s) 335, 658, 1724
Bse3DI GCAATG 2 cut(s) 177, 548
Bse8I GATNNNNATC 1 cut(s) 1377
BseBI CCWGG 1 cut(s) 1178
BseDI CCNNGG 6 cut(s) 214, 418, 639, 913, 1540, 1709
BseGI GGATG 3 cut(s) 975, 1210, 1749
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 2 cut(s) 124, 305
BseMI GCAATG 2 cut(s) 177, 548
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 3 cut(s) 335, 658, 1724
BseRI GAGGAG 1 cut(s) 1560
BseSI GKGCMC 1 cut(s) 1424
BseXI GCAGC 5 cut(s) 346, 384, 1409, 1412, 1600
Bsh1236I CGCG 4 cut(s) 69, 133, 292, 1542
BshFI GGCC 2 cut(s) 298, 918
BshNI GGYRCC 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 1095, 1424
BsiSI CCGG 2 cut(s) 299, 966
BslFI GGGAC 2 cut(s) 1342, 1727
BslI CCNNNNNNNGG 2 cut(s) 124, 305
BsmAI GTCTC 3 cut(s) 27, 133, 544
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 1342, 1727
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 298, 918
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 1095, 1424
Bsp1407I TGTACA 1 cut(s) 716
Bsp143I GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
BspACI CCGC 7 cut(s) 69, 133, 292, 323, 1540, 1542, 1701
BspANI GGCC 2 cut(s) 298, 918
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 4 cut(s) 69, 133, 292, 1542
BspLI GGNNCC 2 cut(s) 416, 1590
BspMI ACCTGC 1 cut(s) 69
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 1701
BsrDI GCAATG 2 cut(s) 177, 548
BsrGI TGTACA 1 cut(s) 716
BsrI ACTGG 3 cut(s) 335, 658, 1724
BssECI CCNNGG 6 cut(s) 214, 418, 639, 913, 1540, 1709
BssMI GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
BssT1I CCWWGG 4 cut(s) 418, 639, 913, 1709
Bst2UI CCWGG 1 cut(s) 1178
Bst4CI ACNGT 4 cut(s) 683, 716, 1289, 1606
BstAUI TGTACA 1 cut(s) 716
BstC8I GCNNGC 5 cut(s) 390, 665, 777, 1010, 1743
BstDEI CTNAG 4 cut(s) 548, 623, 1139, 1340
BstDSI CCRYGG 1 cut(s) 1540
BstF5I GGATG 3 cut(s) 975, 1210, 1749
BstFNI CGCG 4 cut(s) 69, 133, 292, 1542
BstKTI GATC 7 cut(s) 30, 79, 342, 638, 1034, 1381, 1524
BstMAI GTCTC 3 cut(s) 27, 133, 544
BstMBI GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
BstMWI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1539
BstNI CCWGG 1 cut(s) 1178
BstSCI CCNGG 1 cut(s) 1176
BstSFI CTRYAG 3 cut(s) 161, 1024, 1632
BstSLI GKGCMC 1 cut(s) 1424
BstUI CGCG 4 cut(s) 69, 133, 292, 1542
BstV1I GCAGC 5 cut(s) 346, 384, 1409, 1412, 1600
BstV2I GAAGAC 2 cut(s) 198, 1673
BstX2I RGATCY 2 cut(s) 339, 635
BstYI RGATCY 2 cut(s) 339, 635
BsuRI GGCC 2 cut(s) 298, 918
BtgI CCRYGG 1 cut(s) 1540
BtrI CACGTC 1 cut(s) 1425
BtsCI GGATG 3 cut(s) 975, 1210, 1749
BtsIMutI CAGTG 2 cut(s) 688, 712
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 5 cut(s) 390, 665, 777, 1010, 1743
Cfr13I GGNCC 2 cut(s) 879, 1174
Cfr42I CCGCGG 1 cut(s) 1543
CseI GACGC 1 cut(s) 53
Csp6I GTAC 5 cut(s) 717, 842, 945, 1436, 1481
CviAII CATG 5 cut(s) 95, 270, 475, 1304, 1579
CviQI GTAC 5 cut(s) 717, 842, 945, 1436, 1481
DdeI CTNAG 4 cut(s) 548, 623, 1139, 1340
DpnI GATC 7 cut(s) 29, 78, 341, 637, 1033, 1380, 1523
DpnII GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
DraI TTTAAA 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 296, 916
Eco130I CCWWGG 4 cut(s) 418, 639, 913, 1709
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 879, 1174
Eco57I CTGAAG 2 cut(s) 711, 855
EcoO109I RGGNCCY 2 cut(s) 879, 1174
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 1176
EcoT14I CCWWGG 4 cut(s) 418, 639, 913, 1709
ErhI CCWWGG 4 cut(s) 418, 639, 913, 1709
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 5 cut(s) 98, 273, 478, 1307, 1582
FalI AAGNNNNNCTT 2 cut(s) 1479, 1511
FaqI GGGAC 2 cut(s) 1342, 1727
FatI CATG 5 cut(s) 94, 269, 474, 1303, 1578
FauNDI CATATG 2 cut(s) 1158, 1652
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 5 cut(s) 335, 398, 1398, 1401, 1614
FokI GGATG 3 cut(s) 962, 1217, 1736
Fsp4HI GCNGC 5 cut(s) 335, 398, 1398, 1401, 1614
FspBI CTAG 4 cut(s) 371, 389, 1335, 1514
GluI GCNGC 5 cut(s) 335, 398, 1398, 1401, 1614
HaeIII GGCC 2 cut(s) 298, 918
HapII CCGG 2 cut(s) 299, 966
HgaI GACGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 98, 273, 478, 1307, 1582
HindIII AAGCTT 2 cut(s) 665, 1242
HinfI GANTC 6 cut(s) 16, 440, 1212, 1312, 1637, 1777
HpaII CCGG 2 cut(s) 299, 966
HphI GGTGA 4 cut(s) 434, 482, 503, 578
Hpy166II GTNNAC 3 cut(s) 521, 719, 1422
Hpy188III TCNNGA 7 cut(s) 371, 430, 821, 873, 1035, 1216, 1592
Hpy8I GTNNAC 3 cut(s) 521, 719, 1422
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 114, 231, 870
HpyCH4III ACNGT 4 cut(s) 683, 716, 1289, 1606
HpyCH4IV ACGT 2 cut(s) 695, 1424
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1539
HpyF3I CTNAG 4 cut(s) 548, 623, 1139, 1340
HpySE526I ACGT 2 cut(s) 695, 1424
Hsp92II CATG 5 cut(s) 98, 273, 478, 1307, 1582
KspI CCGCGG 1 cut(s) 1543
Kzo9I GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
LmnI GCTCC 4 cut(s) 120, 301, 643, 1594
Lsp1109I GCAGC 5 cut(s) 346, 384, 1409, 1412, 1600
LweI GCATC 2 cut(s) 1117, 1789
MaeI CTAG 4 cut(s) 371, 389, 1335, 1514
MaeII ACGT 2 cut(s) 695, 1424
MaeIII GTNAC 5 cut(s) 470, 530, 584, 1309, 1600
MalI GATC 7 cut(s) 29, 78, 341, 637, 1033, 1380, 1523
MbiI CCGCTC 1 cut(s) 1701
MboI GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
MflI RGATCY 2 cut(s) 339, 635
MhlI GDGCHC 2 cut(s) 1095, 1424
MlsI TGGCCA 1 cut(s) 918
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 2 cut(s) 434, 1306
MmeI TCCRAC 5 cut(s) 429, 1045, 1189, 1260, 1426
Mox20I TGGCCA 1 cut(s) 918
MroXI GAANNNNTTC 1 cut(s) 708
MscI TGGCCA 1 cut(s) 918
MseI TTAA 6 cut(s) 285, 692, 1100, 1223, 1274, 1665
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 1542
MspI CCGG 2 cut(s) 299, 966
MspR9I CCNGG 1 cut(s) 1178
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 1178
MvnI CGCG 4 cut(s) 69, 133, 292, 1542
MwoI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1539
NdeI CATATG 2 cut(s) 1158, 1652
NdeII GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 5 cut(s) 98, 273, 478, 1307, 1582
NlaIV GGNNCC 2 cut(s) 416, 1590
NmuCI GTSAC 3 cut(s) 470, 584, 1309
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 4 cut(s) 16, 1212, 1637, 1777
PflMI CCANNNNNTGG 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 1176
PkrI GCNGC 5 cut(s) 336, 399, 1399, 1402, 1615
PleI GAGTC 2 cut(s) 434, 1306
PpsI GAGTC 2 cut(s) 434, 1306
PpuMI RGGWCCY 2 cut(s) 879, 1174
PsiI TTATAA 1 cut(s) 1322
Psp5II RGGWCCY 2 cut(s) 879, 1174
Psp6I CCWGG 1 cut(s) 1176
PspGI CCWGG 1 cut(s) 1176
PspN4I GGNNCC 2 cut(s) 416, 1590
PspPI GGNCC 2 cut(s) 879, 1174
PspPPI RGGWCCY 2 cut(s) 879, 1174
PsuI RGATCY 2 cut(s) 339, 635
RsaI GTAC 5 cut(s) 718, 843, 946, 1437, 1482
RsaNI GTAC 5 cut(s) 717, 842, 945, 1436, 1481
SacII CCGCGG 1 cut(s) 1543
SaqAI TTAA 6 cut(s) 285, 692, 1100, 1223, 1274, 1665
SatI GCNGC 5 cut(s) 335, 398, 1398, 1401, 1614
Sau3AI GATC 7 cut(s) 27, 76, 339, 635, 1031, 1378, 1521
Sau96I GGNCC 2 cut(s) 879, 1174
ScaI AGTACT 1 cut(s) 1437
SchI GAGTC 2 cut(s) 434, 1306
ScrFI CCNGG 1 cut(s) 1178
SduI GDGCHC 2 cut(s) 1095, 1424
SfaNI GCATC 2 cut(s) 1117, 1789
SfcI CTRYAG 3 cut(s) 161, 1024, 1632
Sfr303I CCGCGG 1 cut(s) 1543
SgrBI CCGCGG 1 cut(s) 1543
SinI GGWCC 2 cut(s) 879, 1174
SmlI CTYRAG 1 cut(s) 1696
SmoI CTYRAG 1 cut(s) 1696
SsiI CCGC 7 cut(s) 69, 133, 292, 323, 1540, 1542, 1701
SspI AATATT 1 cut(s) 497
SspMI CTAG 4 cut(s) 371, 389, 1335, 1514
StyD4I CCNGG 1 cut(s) 1176
StyI CCWWGG 4 cut(s) 418, 639, 913, 1709
TaaI ACNGT 4 cut(s) 683, 716, 1289, 1606
TaiI ACGT 2 cut(s) 698, 1427
TaqI TCGA 1 cut(s) 849
TaqII GACCGA 1 cut(s) 201
TatI WGTACW 2 cut(s) 716, 1435
TfiI GAWTC 4 cut(s) 16, 1212, 1637, 1777
Tru1I TTAA 6 cut(s) 285, 692, 1100, 1223, 1274, 1665
Tru9I TTAA 6 cut(s) 285, 692, 1100, 1223, 1274, 1665
TscAI CASTG 2 cut(s) 688, 719
TseFI GTSAC 3 cut(s) 470, 584, 1309
TseI GCWGC 5 cut(s) 334, 397, 1397, 1400, 1613
Tsp45I GTSAC 3 cut(s) 470, 584, 1309
TspDTI ATGAA 6 cut(s) 222, 390, 588, 697, 1145, 1455
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 2 cut(s) 688, 719
Van91I CCANNNNNTGG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 1420
VpaK11BI GGWCC 2 cut(s) 879, 1174
XapI RAATTY 6 cut(s) 256, 277, 579, 704, 923, 1561
XbaI TCTAGA 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 4 cut(s) 371, 389, 1335, 1514
ZrmI AGTACT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.