Rmu_sc0012495.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012495.1
Physical Location & Seq
Forward (+)
8094 .. 13198
5105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012495.1_g000003.1.cds

Sequence Viewer

Length: 1800 bp
atgagcgaaagtgagattccgtctttgatctctctgtgcatagacgcaatcaaaaccgacctgcttcgcggagatgatcttcttccgattatccgtgagcttccttcgaacttactcgatcttctggtctcacggttgcctccattcgccctacacaagctacagagagcaaggccttttgatgaccgagaagacgagttttctgatgaatgcctcggaaatagtagaaagcgaggaaggtctgcaaggtcagggaatttcgacaaggcatggagaaatttgtttaaatcgcggtggccggagcttggcagtaggattgaaccgcctgactggcagcagatctattgggaaactcatctgcaaaattgtttagatgaagtagcagagctagctttgctgcccccatttgatgggtgccttggtgaaatcaagatttcagactctttattggaattgataggttgtgagggtgacatggctacttcaacttgtgaatattccaaactatatcaccattgtctacactttggttactttgtgcaatgcctgagacttcaaaatgttttctgtgatgaagaaatttgtagcttggaactaaggtggataagatccaaggagcatattactggattatgcaagcttctcaaccagaacagtgaaagtttaacgtcgcttgaattcattcactgtacactttcttcagcttctatcacagcaatttgtagttctctatccccaaagagtttgcaagcacacgaaataaaacacttctcaatcaacacaacaaagtttctggaaactaacccatcttctgtacctgtcgaacttgtgtcatttttatcttcaggaaggtccttgtattctttgaaactctctgacaaccaccttggccaaaaatttgcggaaatggtatttagtacgcttctcaatgcttcgtccggtctatccatccttgacctttcagaaaacaatatatcaggctggctttctgaactctataggagatcacaaaataaccccccaacacctttaggagttggaaagtccttgcaatcattacgggtgctcaatttaaggggaaacaatctcaacaaagatgatgcagatgaccttagatatgctcttgttcatatgcctaacttggaggtcctggatatgagtgataatcctattgaggatgttggaatcaggagtttaattccctttttaatggaagcttctgaaaaatgcactccctttgttgatttaatgttggagaactgtgagctttcctgtcatggagtgactcaacttataaaaaccctttctagcctaagcagaccattgaaatccctatctgttgcagataatgatcttggcagtcaagtagcagcagctttgggagaacttttgtgcacgtccattcaagtactcaatgttggaggtattggattaggttcatctggttttcgggtactacaagaagaacttactaaagagttgaagctagtggagatcaacataagcaaaaaccgcggaggagttgaaactgcaaattttttgtcaaagctcatgtcaaaggctcccgaacttgttacagtcaatgctgcatataatcttatgcctgtagaatccttgaccaccatatgctttgccattaaaaatgcaaaaggtactcttcggcatttggacttgagcggaaatccttgggactataagccagtttatgcttctatgcttgccgacatccaatgtattgaaaggctcgttttgattcttccatctcttacccgagatgcaccctatgacgctgacccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

599

Amino Acids

66.62

Weight (kDa)

5.19

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1295
Acc36I ACCTGC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 1677
AccI GTMKAC 1 cut(s) 520
AccII CGCG 3 cut(s) 69, 292, 1515
AciI CCGC 7 cut(s) 69, 292, 323, 902, 1513, 1515, 1677
AclWI GGATC 1 cut(s) 603
AcoI YGGCCR 2 cut(s) 296, 889
AcsI RAATTY 6 cut(s) 256, 277, 579, 677, 896, 1534
AcuI CTGAAG 2 cut(s) 684, 828
AfaI GTAC 6 cut(s) 691, 816, 919, 1410, 1455, 1654
AfiI CCNNNNNNNGG 2 cut(s) 305, 410
AjiI CACGTC 1 cut(s) 1398
AjnI CCWGG 1 cut(s) 1149
Alw21I GWGCWC 2 cut(s) 1068, 1397
Alw26I GTCTC 2 cut(s) 133, 544
Alw44I GTGCAC 1 cut(s) 1393
AlwI GGATC 1 cut(s) 603
Ama87I CYCGRG 1 cut(s) 1770
AoxI GGCC 3 cut(s) 173, 296, 889
ApaLI GTGCAC 1 cut(s) 1393
ApeKI GCWGC 5 cut(s) 334, 397, 1370, 1373, 1586
ApoI RAATTY 6 cut(s) 256, 277, 579, 677, 896, 1534
ArsI GACNNNNNNTTYG 4 cut(s) 1526, 1538, 1558, 1570
Asp700I GAANNNNTTC 1 cut(s) 681
AspS9I GGNCC 2 cut(s) 852, 1147
AsuHPI GGTGA 3 cut(s) 434, 482, 503
AsuII TTCGAA 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 1770
AvaII GGWCC 2 cut(s) 852, 1147
BaeGI GKGCMC 1 cut(s) 1397
BalI TGGCCA 1 cut(s) 891
BanI GGYRCC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 682, 714
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 1068, 1397
BbvI GCAGC 5 cut(s) 346, 384, 1382, 1385, 1573
BccI CCATC 4 cut(s) 404, 814, 956, 1768
BciT130I CCWGG 1 cut(s) 1151
BcoDI GTCTC 2 cut(s) 133, 544
BfaI CTAG 3 cut(s) 389, 1308, 1487
BfmI CTRYAG 3 cut(s) 161, 997, 1605
BfuAI ACCTGC 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 339
BisI GCNGC 5 cut(s) 335, 398, 1371, 1374, 1587
BlsI GCNGC 5 cut(s) 336, 399, 1372, 1375, 1588
BmcAI AGTACT 1 cut(s) 1410
Bme1390I CCNGG 1 cut(s) 1151
Bme18I GGWCC 2 cut(s) 852, 1147
BmeT110I CYCGRG 1 cut(s) 1770
BmgBI CACGTC 1 cut(s) 1398
BmgT120I GGNCC 2 cut(s) 852, 1147
BmiI GGNNCC 2 cut(s) 416, 1563
BmrFI CCNGG 1 cut(s) 1151
BmsI GCATC 2 cut(s) 1090, 1765
BmtI GCTAGC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 1313
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 1693
BsaBI GATNNNNATC 1 cut(s) 1350
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 6 cut(s) 214, 418, 612, 886, 1513, 1685
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 410
Bse1I ACTGG 3 cut(s) 335, 631, 1700
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 1 cut(s) 1151
BseDI CCNNGG 6 cut(s) 214, 418, 612, 886, 1513, 1685
BseGI GGATG 3 cut(s) 948, 1183, 1725
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 2 cut(s) 305, 410
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 3 cut(s) 335, 631, 1700
BseRI GAGGAG 1 cut(s) 1533
BseSI GKGCMC 1 cut(s) 1397
BseXI GCAGC 5 cut(s) 346, 384, 1382, 1385, 1573
Bsh1236I CGCG 3 cut(s) 69, 292, 1515
BshFI GGCC 3 cut(s) 175, 298, 891
BshNI GGYRCC 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 1068, 1397
BsiHKCI CYCGRG 1 cut(s) 1770
BsiSI CCGG 2 cut(s) 299, 939
BslFI GGGAC 1 cut(s) 1703
BslI CCNNNNNNNGG 2 cut(s) 305, 410
BsmAI GTCTC 2 cut(s) 133, 544
BsmFI GGGAC 1 cut(s) 1703
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 3 cut(s) 175, 298, 891
Bso31I GGTCTC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 1770
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 1068, 1397
Bsp1407I TGTACA 1 cut(s) 689
Bsp143I GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
BspACI CCGC 7 cut(s) 69, 292, 323, 902, 1513, 1515, 1677
BspANI GGCC 3 cut(s) 175, 298, 891
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 3 cut(s) 69, 292, 1515
BspLI GGNNCC 2 cut(s) 416, 1563
BspMI ACCTGC 1 cut(s) 69
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 1677
BsrDI GCAATG 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 689
BsrI ACTGG 3 cut(s) 335, 631, 1700
BssECI CCNNGG 6 cut(s) 214, 418, 612, 886, 1513, 1685
BssMI GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
BssT1I CCWWGG 4 cut(s) 418, 612, 886, 1685
Bst2UI CCWGG 1 cut(s) 1151
Bst4CI ACNGT 5 cut(s) 135, 656, 689, 1262, 1579
Bst6I CTCTTC 1 cut(s) 1662
BstAUI TGTACA 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 5 cut(s) 390, 638, 750, 983, 1719
BstDEI CTNAG 4 cut(s) 548, 596, 1112, 1313
BstDSI CCRYGG 1 cut(s) 1513
BstF5I GGATG 3 cut(s) 948, 1183, 1725
BstFNI CGCG 3 cut(s) 69, 292, 1515
BstKTI GATC 8 cut(s) 30, 79, 121, 342, 611, 1007, 1354, 1497
BstMAI GTCTC 2 cut(s) 133, 544
BstMBI GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
BstMWI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1512
BstNI CCWGG 1 cut(s) 1151
BstSCI CCNGG 1 cut(s) 1149
BstSFI CTRYAG 3 cut(s) 161, 997, 1605
BstSLI GKGCMC 1 cut(s) 1397
BstUI CGCG 3 cut(s) 69, 292, 1515
BstV1I GCAGC 5 cut(s) 346, 384, 1382, 1385, 1573
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 339, 608
BstYI RGATCY 2 cut(s) 339, 608
BsuRI GGCC 3 cut(s) 175, 298, 891
BtgI CCRYGG 1 cut(s) 1513
BtrI CACGTC 1 cut(s) 1398
BtsCI GGATG 3 cut(s) 948, 1183, 1725
BtsIMutI CAGTG 2 cut(s) 661, 685
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 5 cut(s) 390, 638, 750, 983, 1719
Cfr13I GGNCC 2 cut(s) 852, 1147
Cfr42I CCGCGG 1 cut(s) 1516
CseI GACGC 1 cut(s) 53
Csp6I GTAC 6 cut(s) 690, 815, 918, 1409, 1454, 1653
CviAII CATG 4 cut(s) 270, 475, 1277, 1552
CviQI GTAC 6 cut(s) 690, 815, 918, 1409, 1454, 1653
DdeI CTNAG 4 cut(s) 548, 596, 1112, 1313
DpnI GATC 8 cut(s) 29, 78, 120, 341, 610, 1006, 1353, 1496
DpnII GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
DraI TTTAAA 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 296, 889
Eam1104I CTCTTC 1 cut(s) 1662
EarI CTCTTC 1 cut(s) 1662
Eco130I CCWWGG 4 cut(s) 418, 612, 886, 1685
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 852, 1147
Eco57I CTGAAG 2 cut(s) 684, 828
Eco88I CYCGRG 1 cut(s) 1770
EcoO109I RGGNCCY 2 cut(s) 852, 1147
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 1149
EcoT14I CCWWGG 4 cut(s) 418, 612, 886, 1685
ErhI CCWWGG 4 cut(s) 418, 612, 886, 1685
FaeI CATG 4 cut(s) 273, 478, 1280, 1555
FalI AAGNNNNNCTT 4 cut(s) 1452, 1484, 1641, 1673
FaqI GGGAC 1 cut(s) 1703
FatI CATG 4 cut(s) 269, 474, 1276, 1551
FauNDI CATATG 2 cut(s) 1131, 1625
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 5 cut(s) 335, 398, 1371, 1374, 1587
FokI GGATG 3 cut(s) 935, 1190, 1712
Fsp4HI GCNGC 5 cut(s) 335, 398, 1371, 1374, 1587
FspBI CTAG 3 cut(s) 389, 1308, 1487
GluI GCNGC 5 cut(s) 335, 398, 1371, 1374, 1587
HaeIII GGCC 3 cut(s) 175, 298, 891
HapII CCGG 2 cut(s) 299, 939
HgaI GACGC 1 cut(s) 53
Hin1II CATG 4 cut(s) 273, 478, 1280, 1555
HindIII AAGCTT 2 cut(s) 638, 1215
HinfI GANTC 6 cut(s) 16, 440, 1185, 1285, 1610, 1753
HpaII CCGG 2 cut(s) 299, 939
HphI GGTGA 3 cut(s) 434, 482, 503
Hpy166II GTNNAC 3 cut(s) 521, 692, 1395
Hpy188I TCNGA 8 cut(s) 87, 205, 218, 439, 877, 964, 991, 1222
Hpy188III TCNNGA 5 cut(s) 430, 794, 846, 1189, 1565
Hpy8I GTNNAC 3 cut(s) 521, 692, 1395
Hpy99I CGWCG 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 114, 231, 843
HpyCH4III ACNGT 5 cut(s) 135, 656, 689, 1262, 1579
HpyCH4IV ACGT 2 cut(s) 668, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1512
HpyF3I CTNAG 4 cut(s) 548, 596, 1112, 1313
HpySE526I ACGT 2 cut(s) 668, 1397
Hsp92II CATG 4 cut(s) 273, 478, 1280, 1555
KspI CCGCGG 1 cut(s) 1516
Kzo9I GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
LmnI GCTCC 3 cut(s) 301, 616, 1567
Lsp1109I GCAGC 5 cut(s) 346, 384, 1382, 1385, 1573
LweI GCATC 2 cut(s) 1090, 1765
MaeI CTAG 3 cut(s) 389, 1308, 1487
MaeII ACGT 2 cut(s) 668, 1397
MaeIII GTNAC 4 cut(s) 470, 530, 1282, 1573
MalI GATC 8 cut(s) 29, 78, 120, 341, 610, 1006, 1353, 1496
MbiI CCGCTC 1 cut(s) 1677
MboI GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
MflI RGATCY 2 cut(s) 339, 608
MhlI GDGCHC 2 cut(s) 1068, 1397
MlsI TGGCCA 1 cut(s) 891
MluNI TGGCCA 1 cut(s) 891
MlyI GAGTC 2 cut(s) 434, 1279
MmeI TCCRAC 4 cut(s) 1018, 1162, 1233, 1399
MnlI CCTC 8 cut(s) 150, 224, 227, 460, 1138, 1168, 1415, 1511
Mox20I TGGCCA 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 891
MseI TTAA 7 cut(s) 285, 665, 1073, 1196, 1208, 1247, 1638
Msp20I TGGCCA 1 cut(s) 891
MspA1I CMGCKG 1 cut(s) 1515
MspI CCGG 2 cut(s) 299, 939
MspR9I CCNGG 1 cut(s) 1151
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 1151
MvnI CGCG 3 cut(s) 69, 292, 1515
MwoI GCNNNNNNNGC 4 cut(s) 331, 389, 394, 1512
NdeI CATATG 2 cut(s) 1131, 1625
NdeII GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 4 cut(s) 273, 478, 1280, 1555
NlaIV GGNNCC 2 cut(s) 416, 1563
NmuCI GTSAC 2 cut(s) 470, 1282
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 175
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 4 cut(s) 16, 1185, 1610, 1753
PflMI CCANNNNNTGG 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 1149
PkrI GCNGC 5 cut(s) 336, 399, 1372, 1375, 1588
PleI GAGTC 2 cut(s) 434, 1279
PpsI GAGTC 2 cut(s) 434, 1279
PpuMI RGGWCCY 2 cut(s) 852, 1147
PsiI TTATAA 1 cut(s) 1295
Psp5II RGGWCCY 2 cut(s) 852, 1147
Psp6I CCWGG 1 cut(s) 1149
PspGI CCWGG 1 cut(s) 1149
PspN4I GGNNCC 2 cut(s) 416, 1563
PspPI GGNCC 2 cut(s) 852, 1147
PspPPI RGGWCCY 2 cut(s) 852, 1147
PsuI RGATCY 2 cut(s) 339, 608
RsaI GTAC 6 cut(s) 691, 816, 919, 1410, 1455, 1654
RsaNI GTAC 6 cut(s) 690, 815, 918, 1409, 1454, 1653
SacII CCGCGG 1 cut(s) 1516
SaqAI TTAA 7 cut(s) 285, 665, 1073, 1196, 1208, 1247, 1638
SatI GCNGC 5 cut(s) 335, 398, 1371, 1374, 1587
Sau3AI GATC 8 cut(s) 27, 76, 118, 339, 608, 1004, 1351, 1494
Sau96I GGNCC 2 cut(s) 852, 1147
ScaI AGTACT 1 cut(s) 1410
SchI GAGTC 2 cut(s) 434, 1279
ScrFI CCNGG 1 cut(s) 1151
SduI GDGCHC 2 cut(s) 1068, 1397
SfaNI GCATC 2 cut(s) 1090, 1765
SfcI CTRYAG 3 cut(s) 161, 997, 1605
Sfr303I CCGCGG 1 cut(s) 1516
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 1516
SinI GGWCC 2 cut(s) 852, 1147
SmlI CTYRAG 1 cut(s) 1672
SmoI CTYRAG 1 cut(s) 1672
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 7 cut(s) 69, 292, 323, 902, 1513, 1515, 1677
SspI AATATT 1 cut(s) 497
SspMI CTAG 3 cut(s) 389, 1308, 1487
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 1149
StyI CCWWGG 4 cut(s) 418, 612, 886, 1685
TaaI ACNGT 5 cut(s) 135, 656, 689, 1262, 1579
TaiI ACGT 2 cut(s) 671, 1400
TaqI TCGA 4 cut(s) 107, 117, 261, 822
TaqII GACCGA 1 cut(s) 201
TatI WGTACW 2 cut(s) 689, 1408
TfiI GAWTC 4 cut(s) 16, 1185, 1610, 1753
Tru1I TTAA 7 cut(s) 285, 665, 1073, 1196, 1208, 1247, 1638
Tru9I TTAA 7 cut(s) 285, 665, 1073, 1196, 1208, 1247, 1638
TscAI CASTG 2 cut(s) 661, 692
TseFI GTSAC 2 cut(s) 470, 1282
TseI GCWGC 5 cut(s) 334, 397, 1370, 1373, 1586
Tsp45I GTSAC 2 cut(s) 470, 1282
TspDTI ATGAA 6 cut(s) 222, 390, 588, 670, 1118, 1428
TspGWI ACGGA 2 cut(s) 9, 83
TspRI CASTG 2 cut(s) 661, 692
Van91I CCANNNNNTGG 1 cut(s) 410
VneI GTGCAC 1 cut(s) 1393
VpaK11BI GGWCC 2 cut(s) 852, 1147
XapI RAATTY 6 cut(s) 256, 277, 579, 677, 896, 1534
XmiI GTMKAC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 3 cut(s) 389, 1308, 1487
ZrmI AGTACT 1 cut(s) 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.