Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017770.1

Orthogroup ID

OG0006860

Physical Location & Seq

Genomic Coordinates Reverse (-)

6794 .. 8517

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017770.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgcagatatcaggctggctttctgaactctataggagatcacaaaataaccccccaacacctttaggagttggaaagtccttgcaatcattacgggtgctcaatttaaggggaaacaatctcaacaaagatgatgcagatgaccttagatatgctcttgttcatatgcctaacttggaggtcctggatatgagtgataatcctattgaggatgttggaatcaggagtttaattccctttttaatggaagcttctgaaaaatgcactccctttgttgatttaatgttggagaactgtgagctttcctgtcatggagtgactcaacttataaaaaccctttctagcctaagcagaccattgaagtccctatctgttgcagataatgatcttggcagtcaagtagcagcagctttgggagaacttttgtgcacgtccattcaagtactcaatgttggaggtattggattaggttcatctggttttcgggtactacaagaagaacttactaaagagttgaagctagtggagatcaacataagcaaaaaccgcggaggagttgaaactgcaaattttttgtcaaagctcatgtcaaaggctcccgaacttgttacagtcaatgctgcatataatcttatgcctgtagaatccttgaccaccatatgctttgccattaaaaatgcaaaaggtactcttcggcatttggacttgagcggaaatccttgggactataagccagtttatgcttctatgcttgccgacatccaatgtattgaaaggctcgttttgattcttccatctcttacccgagatgcaccctatgacgctgacccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

277

Amino Acids

30.3

Weight (kDa)

5.09

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20210 AT2G20210
fragaria_vesca	FvH4_2g19870
malus_domestica	MD10G1171000.v1.1
prunus_persica	Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1
pyrus_communis	pycom10g14740
rosa_chinensis	RchiOBHm_Chr6g0285561
rosa_laevigata	RLG00000012627
rosa_multiflora	Rmu_sc0012495.1_g000003 Rmu_sc0017770.1_g000003
rosa_roxburghii	Rroxscaffold_7G00182940
rosa_rugosa	Rorug06G0175500
rosa_samantha	Rh6AG287100 Rh6BG288300 Rh6CG289500 Rh6DG282300
rosa_wichuraiana	Rw6G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	711
AccII	CGCG	1 cut(s)	549
AciI	CCGC	3 cut(s)	547, 549, 711
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	3 cut(s)	444, 489, 688
AgsI	TTSAA	5 cut(s)	361, 440, 517, 560, 773
AjiI	CACGTC	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	5 cut(s)	251, 301, 410, 520, 583
AluI	AGCT	5 cut(s)	251, 301, 410, 520, 583
Alw21I	GWGCWC	2 cut(s)	102, 431
Alw44I	GTGCAC	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	804
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	404, 407, 620
ApoI	RAATTY	1 cut(s)	568
ArsI	GACNNNNNNTTYG	4 cut(s)	560, 572, 592, 604
AspS9I	GGNCC	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	102, 431
BbvI	GCAGC	3 cut(s)	416, 419, 607
BccI	CCATC	1 cut(s)	802
BciT130I	CCWGG	1 cut(s)	185
BfaI	CTAG	2 cut(s)	342, 521
BfmI	CTRYAG	2 cut(s)	31, 639
BisI	GCNGC	3 cut(s)	405, 408, 621
BlsI	GCNGC	3 cut(s)	406, 409, 622
BmcAI	AGTACT	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	804
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	124, 799
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	727
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	547, 719
Bse1I	ACTGG	1 cut(s)	734
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	547, 719
BseGI	GGATG	2 cut(s)	217, 759
BseJI	GATNNNNATC	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	567
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	416, 419, 607
Bsh1236I	CGCG	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	102, 431
BsiHKCI	CYCGRG	1 cut(s)	804
BslFI	GGGAC	2 cut(s)	349, 737
BsmFI	GGGAC	2 cut(s)	349, 737
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	102, 431
Bsp143I	GATC	3 cut(s)	38, 385, 528
BspACI	CCGC	3 cut(s)	547, 549, 711
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	597
BsrBI	CCGCTC	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	2 cut(s)	547, 719
BssMI	GATC	3 cut(s)	38, 385, 528
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	296, 613
Bst6I	CTCTTC	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	17, 753
BstDEI	CTNAG	2 cut(s)	146, 347
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	217, 759
BstFNI	CGCG	1 cut(s)	549
BstKTI	GATC	3 cut(s)	41, 388, 531
BstMBI	GATC	3 cut(s)	38, 385, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	2 cut(s)	31, 639
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	416, 419, 607
BtgI	CCRYGG	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	217, 759
Cac8I	GCNNGC	2 cut(s)	17, 753
Cfr13I	GGNCC	1 cut(s)	181
Cfr42I	CCGCGG	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	443, 488, 687
CviAII	CATG	2 cut(s)	311, 586
CviQI	GTAC	3 cut(s)	443, 488, 687
DdeI	CTNAG	2 cut(s)	146, 347
DpnI	GATC	3 cut(s)	40, 387, 530
DpnII	GATC	3 cut(s)	38, 385, 528
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	804
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	2 cut(s)	314, 589
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 675, 707
FaqI	GGGAC	2 cut(s)	349, 737
FatI	CATG	2 cut(s)	310, 585
FauNDI	CATATG	2 cut(s)	165, 659
Fnu4HI	GCNGC	3 cut(s)	405, 408, 621
FokI	GGATG	2 cut(s)	224, 746
Fsp4HI	GCNGC	3 cut(s)	405, 408, 621
FspBI	CTAG	2 cut(s)	342, 521
GluI	GCNGC	3 cut(s)	405, 408, 621
Hin1II	CATG	2 cut(s)	314, 589
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	219, 319, 644, 787
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	25, 256
Hpy188III	TCNNGA	2 cut(s)	223, 599
Hpy8I	GTNNAC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	296, 613
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpyF3I	CTNAG	2 cut(s)	146, 347
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	2 cut(s)	314, 589
KspI	CCGCGG	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	38, 385, 528
LmnI	GCTCC	1 cut(s)	601
LpnPI	CCDG	7 cut(s)	170, 197, 208, 319, 462, 651, 747
Lsp1109I	GCAGC	3 cut(s)	416, 419, 607
LweI	GCATC	2 cut(s)	124, 799
MaeI	CTAG	2 cut(s)	342, 521
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	316, 607
MalI	GATC	3 cut(s)	40, 387, 530
MbiI	CCGCTC	1 cut(s)	711
MboI	GATC	3 cut(s)	38, 385, 528
MboII	GAAGA	3 cut(s)	509, 683, 782
MhlI	GDGCHC	2 cut(s)	102, 431
MluCI	AATT	3 cut(s)	103, 231, 568
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	4 cut(s)	52, 196, 267, 433
MnlI	CCTC	4 cut(s)	172, 202, 449, 545
MseI	TTAA	5 cut(s)	107, 230, 242, 281, 672
MspA1I	CMGCKG	1 cut(s)	549
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	546
NdeI	CATATG	2 cut(s)	165, 659
NdeII	GATC	3 cut(s)	38, 385, 528
NlaIII	CATG	2 cut(s)	314, 589
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	219, 644, 787
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	406, 409, 622
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
RsaI	GTAC	3 cut(s)	444, 489, 688
RsaNI	GTAC	3 cut(s)	443, 488, 687
SacII	CCGCGG	1 cut(s)	550
SaqAI	TTAA	5 cut(s)	107, 230, 242, 281, 672
SatI	GCNGC	3 cut(s)	405, 408, 621
Sau3AI	GATC	3 cut(s)	38, 385, 528
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	102, 431
SfaNI	GCATC	2 cut(s)	124, 799
SfcI	CTRYAG	2 cut(s)	31, 639
Sfr303I	CCGCGG	1 cut(s)	550
SgrBI	CCGCGG	1 cut(s)	550
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	103, 231, 568
SsiI	CCGC	3 cut(s)	547, 549, 711
SspMI	CTAG	2 cut(s)	342, 521
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	2 cut(s)	296, 613
TaiI	ACGT	1 cut(s)	434
TasI	AATT	3 cut(s)	103, 231, 568
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	3 cut(s)	219, 644, 787
Tru1I	TTAA	5 cut(s)	107, 230, 242, 281, 672
Tru9I	TTAA	5 cut(s)	107, 230, 242, 281, 672
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	404, 407, 620
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	152, 462
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	2 cut(s)	342, 521
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.