Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006860

Physical Location & Seq

Genomic Coordinates Forward (+)

27574058 .. 27574922

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAATGGCACGATCTGTTGTGGTGTTCCTAATGGCTGCACTCTTGGTAGCCTCCTCGAATGCACAATCTCCATCATCTTCACCAGCTGCATCCCCGAATGCGGCTGCTAAAACACCTAATGCGGCTGCTACCGCACCTCCACCATCAACATCTCCTGCGCCTACTGTTTCACCTGCTTCTTCATCGAAGACAGCTCCTGCGGCTACTCCTTCTCAAGTGAAGACTACACCAGAGGCTGCTCCAACTGCTTCCAAGACTTCACCACAAGCTGCCCCTACTTCTTCCAAGACTTCACCACAAGCTGCTCCAACAACTTCCCCAAGTTCGTCAGATGCTACTCCTTCTACCGCACCTGTTGCTAGCTCTCCACCATCTCCTCCATCCCCTACCTCTGAATCTCAGGCAATTCCTCCCACTACAGACTCTGTACCAACTGATGGGGCAGGTGGGGCACCTTCCCCATCCAACAATGGTATTGTTTTGAACAAGATCAACGTAGCCGGCTCTGTTGCCCTTGGAGTTGTTGCAGCTGTCTTGGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

182

Amino Acids

17.22

Weight (kDa)

9.3

Isoelectric Point (pI)

91.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20210 AT2G20210
fragaria_vesca	FvH4_2g19870
malus_domestica	MD10G1171000.v1.1
prunus_persica	Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1 Prupe.8G209500_v2.0.a1
pyrus_communis	pycom10g14740
rosa_chinensis	RchiOBHm_Chr6g0285561
rosa_laevigata	RLG00000012627
rosa_multiflora	Rmu_sc0012495.1_g000003 Rmu_sc0017770.1_g000003
rosa_roxburghii	Rroxscaffold_7G00182940
rosa_rugosa	Rorug06G0175500
rosa_samantha	Rh6AG287100 Rh6BG288300 Rh6CG289500 Rh6DG282300
rosa_wichuraiana	Rw6G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	184, 437
Acc36I	ACCTGC	2 cut(s)	184, 437
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	440
AciI	CCGC	5 cut(s)	104, 125, 135, 203, 351
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	103, 440
AgsI	TTSAA	1 cut(s)	487
AluBI	AGCT	6 cut(s)	89, 197, 272, 305, 366, 533
AluI	AGCT	6 cut(s)	89, 197, 272, 305, 366, 533
AlwNI	CAGNNNCTG	3 cut(s)	200, 239, 428
ApeKI	GCWGC	8 cut(s)	38, 89, 107, 128, 239, 272, 305, 530
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	75, 165, 255, 288
AsuNHI	GCTAGC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	197, 230
BbvI	GCAGC	8 cut(s)	25, 76, 94, 115, 226, 259, 292, 542
BccI	CCATC	6 cut(s)	82, 154, 382, 391, 434, 472
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	184, 437
BmiI	GGNNCC	1 cut(s)	456
BmsI	GCATC	2 cut(s)	101, 325
BmtI	GCTAGC	1 cut(s)	366
BpiI	GAAGAC	2 cut(s)	197, 230
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 440
Bse118I	RCCGGY	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	3 cut(s)	92, 383, 464
BseLI	CCNNNNNNNGG	2 cut(s)	103, 440
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	46, 369
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	8 cut(s)	25, 76, 94, 115, 226, 259, 292, 542
BsgI	GTGCAG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	103, 440
BsmI	GAATGC	2 cut(s)	67, 106
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	14, 492
BspACI	CCGC	5 cut(s)	104, 125, 135, 203, 351
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	456
BspMI	ACCTGC	2 cut(s)	184, 437
BspOI	GCTAGC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	14, 492
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	364, 505
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	92, 383, 464
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	17, 495
BstMBI	GATC	2 cut(s)	14, 492
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 203, 248, 359, 452
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	8 cut(s)	25, 76, 94, 115, 226, 259, 292, 542
BstV2I	GAAGAC	2 cut(s)	197, 230
BtsCI	GGATG	3 cut(s)	92, 383, 464
BveI	ACCTGC	2 cut(s)	184, 437
Cac8I	GCNNGC	2 cut(s)	364, 505
CaiI	CAGNNNCTG	3 cut(s)	200, 239, 428
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	431
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	16, 494
DpnII	GATC	2 cut(s)	14, 492
Eco130I	CCWWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaiI	YATR	1 cut(s)	545
FokI	GGATG	3 cut(s)	79, 370, 451
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	162
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	398, 425
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	4 cut(s)	75, 165, 255, 288
Hpy188I	TCNGA	2 cut(s)	334, 397
HpyAV	CCTTC	3 cut(s)	222, 354, 468
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	41, 65, 92, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 203, 248, 359, 452
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	498
HspAI	GCGC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	14, 492
LmnI	GCTCC	3 cut(s)	202, 247, 313
LpnPI	CCDG	9 cut(s)	99, 171, 189, 213, 246, 369, 389, 432, 517
Lsp1109I	GCAGC	8 cut(s)	25, 76, 94, 115, 226, 259, 292, 542
LweI	GCATC	2 cut(s)	101, 325
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	498
MalI	GATC	2 cut(s)	16, 494
MboI	GATC	2 cut(s)	14, 492
MboII	GAAGA	5 cut(s)	72, 174, 202, 235, 276
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	3 cut(s)	269, 335, 492
MnlI	CCTC	7 cut(s)	64, 67, 150, 229, 390, 403, 423
MroNI	GCCGGC	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	89, 533
MspI	CCGG	1 cut(s)	504
Mva1269I	GAATGC	2 cut(s)	67, 106
MwoI	GCNNNNNNNGC	5 cut(s)	134, 203, 248, 359, 452
NaeI	GCCGGC	1 cut(s)	505
NdeII	GATC	2 cut(s)	14, 492
NgoMIV	GCCGGC	1 cut(s)	503
NheI	GCTAGC	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	456
PaqCI	CACCTGC	2 cut(s)	184, 437
PctI	GAATGC	2 cut(s)	67, 106
PdiI	GCCGGC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	440
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	456
PstNI	CAGNNNCTG	3 cut(s)	200, 239, 428
PvuII	CAGCTG	2 cut(s)	89, 533
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	14, 492
SchI	GAGTC	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	101, 325
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	5 cut(s)	104, 125, 135, 203, 351
SspMI	CTAG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	59, 188
TasI	AATT	1 cut(s)	408
TauI	GCSGC	3 cut(s)	107, 128, 206
TfiI	GAWTC	1 cut(s)	398
TseI	GCWGC	8 cut(s)	38, 89, 107, 128, 239, 272, 305, 530
TspDTI	ATGAA	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.