Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017718

Physical Location & Seq

Genomic Coordinates Forward (+)

63785911 .. 63786355

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAAATAGCAGTTCCTGTCAAAGTTGGTTTTACTGAGTTTGTTAAGATCACGAAAGATCCAAGCACTAAAAGAACAGTTGCCACTGGTTTCAGTATTGATGTCTGTGAGGCTGCATTGGAAATGTTACCATATGCTCTTCCTTATGAGTTCATTCCTTTTGCTAAGTCTGATGGCTCTAGTGCTGGCACGAATAATGATTTATGCTATCAACTCTATCGTGGGGTACAAAAGTTCTTTATGCTACAGCTTCAACAGAATTTAGTAACTCATATTTACGATATTCTTAATTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

99

Amino Acids

11.13

Weight (kDa)

6.54

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27990
rosa_chinensis	RchiOBHm_Chr1g0374931 RchiOBHm_Chr1g0374941 RchiOBHm_Chr6g0304571
rosa_multiflora	Rmu_co8270627.1_g000001 Rmu_co8277111.1_g000001 Rmu_sc0003145.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062580 Rroxscaffold_4G00294190 Rroxscaffold_4G00309270
rosa_rugosa	Rorug01G0386200
rosa_wichuraiana	Rw1G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	254
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	259
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	48, 58
BspCNI	CTCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	48, 58
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	36, 165
BstKTI	GATC	2 cut(s)	51, 61
BstMBI	GATC	2 cut(s)	48, 58
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	227
CviJI	RGCY	3 cut(s)	113, 177, 250
CviKI_1	RGCY	3 cut(s)	113, 177, 250
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	36, 165
DpnI	GATC	2 cut(s)	50, 60
DpnII	GATC	2 cut(s)	48, 58
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
FaiI	YATR	7 cut(s)	133, 135, 147, 205, 242, 273, 298
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	36, 165
Kzo9I	GATC	2 cut(s)	48, 58
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	30, 72, 171
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	126, 265
MalI	GATC	2 cut(s)	50, 60
MboI	GATC	2 cut(s)	48, 58
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	2 cut(s)	259, 289
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	45, 288
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	48, 58
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	45, 288
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	48, 58
SetI	ASST	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	245
SgeI	CNNG	8 cut(s)	29, 64, 75, 99, 192, 198, 202, 233
Sse9I	AATT	2 cut(s)	259, 289
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	2 cut(s)	259, 289
Tru1I	TTAA	2 cut(s)	45, 288
Tru9I	TTAA	2 cut(s)	45, 288
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	17, 142
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	259
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.