Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270627.1

Orthogroup ID

OG0017718

Physical Location & Seq

Genomic Coordinates Forward (+)

136 .. 594

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgattgttaatgtgaatggtaatggagtaagagcagttggttattggacaccggaaaatggaaggttaatgaagcagttgaattcaacaaacagttgtaatgtttcaggtttcgagtgtgatgctcttggacccattatatggccgggagagtcatcctccgttcccaaaggatgggagatcccagaaaatggtacgaggttaagatttggagttccagtgaaggatggttttacagagtttgttaaagtaacaacagatttgggaactaataccactgatgtcaccgggttcagtattgatgtgtttaaagctgtagtggaactgttaccatatgcacttccttatgagttgattccctatgcatatcctaatggcaccagcgctggcacatataatgatttaatctatcaagtataccttggggtaaatttctttacaattgtgtatttgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

152

Amino Acids

16.68

Weight (kDa)

4.56

Isoelectric Point (pI)

16.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27990
rosa_chinensis	RchiOBHm_Chr1g0374931 RchiOBHm_Chr1g0374941 RchiOBHm_Chr6g0304571
rosa_multiflora	Rmu_co8270627.1_g000001 Rmu_co8277111.1_g000001 Rmu_sc0003145.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062580 Rroxscaffold_4G00294190 Rroxscaffold_4G00309270
rosa_rugosa	Rorug01G0386200
rosa_wichuraiana	Rw1G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	3 cut(s)	141, 174, 191
AccI	GTMKAC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	82, 430
AfaI	GTAC	1 cut(s)	196
AfeI	AGCGCT	1 cut(s)	385
AfiI	CCNNNNNNNGG	4 cut(s)	59, 141, 174, 191
AgsI	TTSAA	2 cut(s)	82, 87
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	385
AoxI	GGCC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	82, 430
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	2 cut(s)	147, 289
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	377
BccI	CCATC	2 cut(s)	168, 221
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	2 cut(s)	147, 289
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	147, 289
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	133, 379
BmrFI	CCNGG	2 cut(s)	147, 289
BmsI	GCATC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuMI	CCSGG	2 cut(s)	147, 289
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 141, 174, 191
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	3 cut(s)	155, 179, 232
BseLI	CCNNNNNNNGG	4 cut(s)	59, 141, 174, 191
BseNI	ACTGG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	53, 146, 288
BslI	CCNNNNNNNGG	4 cut(s)	59, 141, 174, 191
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	133, 379
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	180
BssNAI	GTATAC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	421
Bst1107I	GTATAC	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	95, 327
BstC8I	GCNNGC	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	155, 179, 232
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	145, 287
BstSFI	CTRYAG	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	155, 179, 232
BtsIMutI	CAGTG	2 cut(s)	225, 276
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	195
CviJI	RGCY	2 cut(s)	145, 314
CviKI_1	RGCY	2 cut(s)	145, 314
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	421
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	417
FokI	GGATG	3 cut(s)	142, 186, 239
GlaI	GCGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	3 cut(s)	53, 146, 288
HhaI	GCGC	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	2 cut(s)	152, 355
HpaII	CCGG	3 cut(s)	53, 146, 288
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	57, 217
HpyCH4III	ACNGT	2 cut(s)	95, 327
HpyCH4V	TGCA	2 cut(s)	338, 365
HspAI	GCGC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	66, 93, 159, 198, 231, 301, 372, 394
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	3 cut(s)	250, 283, 327
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	3 cut(s)	82, 430, 441
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	169, 192
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	7 cut(s)	9, 68, 203, 246, 309, 404, 457
MspI	CCGG	3 cut(s)	53, 146, 288
MspR9I	CCNGG	2 cut(s)	147, 289
MunI	CAATTG	1 cut(s)	441
NciI	CCSGG	2 cut(s)	147, 289
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	180
NlaIV	GGNNCC	2 cut(s)	133, 379
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	355
PflMI	CCANNNNNTGG	3 cut(s)	141, 174, 191
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	133, 379
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	7 cut(s)	9, 68, 203, 246, 309, 404, 457
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	147, 289
SetI	ASST	5 cut(s)	68, 112, 203, 316, 423
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	3 cut(s)	82, 430, 441
StyD4I	CCNGG	2 cut(s)	145, 287
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	95, 327
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	82, 430, 441
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	7 cut(s)	9, 68, 203, 246, 309, 404, 457
Tru9I	TTAA	7 cut(s)	9, 68, 203, 246, 309, 404, 457
TscAI	CASTG	2 cut(s)	225, 283
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	2 cut(s)	225, 283
Van91I	CCANNNNNTGG	3 cut(s)	141, 174, 191
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	82, 430
XmiI	GTMKAC	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.