Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277111.1

Orthogroup ID

OG0017718

Physical Location & Seq

Genomic Coordinates Reverse (-)

168 .. 830

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277111.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggcaattgaagaagttaggactacaagctttggtttccaaaggagcaatgcttccatcaactcatcaacagatcttgaaagttttgaggtctctcaatatggtccaaaactttgccaagcactgtcacttactagatttgaaggcatagctggaaatttcagccttgttgatgggcagcgtcaaacatcaatttttcagatagtcaatataaatggtcgtggagctagaacagttggattttggaccttgaaaaatggaatcatgagaaaattgggttcaccatcatcagtaaactcgagcataagttcaacttctaaaggcgatcttggaccaattatatggcccggagattcaatctctgttcccaaaggatgggtagacccagcaaacggcaagaagttgagaataggagttcccgtagaggaaggtttcactgagttcgtttctgtgacaaaagatccaagcactaacacaacatatgtcacagggttcagtattgacgtctttaaggctgcagtggacatattaccttatgctctttcttacgagttgattccctttgcaaatcctgatggcacgatggctggcacttacaatgatttgtgctatcaagtatatcttggggtaaaattcttgttctttcgtggttttaaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

220

Amino Acids

23.97

Weight (kDa)

7.68

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27990
rosa_chinensis	RchiOBHm_Chr1g0374931 RchiOBHm_Chr1g0374941 RchiOBHm_Chr6g0304571
rosa_multiflora	Rmu_co8270627.1_g000001 Rmu_co8277111.1_g000001 Rmu_sc0003145.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062580 Rroxscaffold_4G00294190 Rroxscaffold_4G00309270
rosa_rugosa	Rorug01G0386200
rosa_wichuraiana	Rw1G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	507
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	157, 632
AcyI	GRCGYC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	375, 392
AgsI	TTSAA	6 cut(s)	11, 80, 143, 253, 312, 357
AluBI	AGCT	3 cut(s)	30, 152, 227
AluI	AGCT	3 cut(s)	30, 152, 227
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	178, 515
ApoI	RAATTY	2 cut(s)	157, 632
AspS9I	GGNCC	4 cut(s)	104, 246, 332, 345
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	104, 246, 332
BbvI	GCAGC	2 cut(s)	190, 502
BccI	CCATC	6 cut(s)	65, 167, 292, 369, 569, 577
BceAI	ACGGC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	135, 228
BfmI	CTRYAG	1 cut(s)	516
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	2 cut(s)	179, 516
BlsI	GCNGC	2 cut(s)	180, 517
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	3 cut(s)	104, 246, 332
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	4 cut(s)	104, 246, 332, 345
BmrFI	CCNGG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 392
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	375, 392
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	190, 502
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	375, 392
BsmAI	GTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	73, 325, 460
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	3 cut(s)	73, 325, 460
BssNI	GRCGYC	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	126, 235, 660
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	76, 328, 463
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	3 cut(s)	73, 325, 460
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	190, 502
BstX2I	RGATCY	2 cut(s)	73, 460
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	2 cut(s)	73, 460
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	122, 435, 525
Cac8I	GCNNGC	1 cut(s)	589
CciI	TCATGA	1 cut(s)	264
Cfr13I	GGNCC	4 cut(s)	104, 246, 332, 345
CseI	GACGC	1 cut(s)	170
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	30, 152, 165, 227, 346, 515, 587
CviKI_1	RGCY	7 cut(s)	30, 152, 165, 227, 346, 515, 587
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	3 cut(s)	75, 327, 462
DpnII	GATC	3 cut(s)	73, 325, 460
DraI	TTTAAA	1 cut(s)	655
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	104, 246, 332
Eco88I	CYCGRG	1 cut(s)	298
FaeI	CATG	1 cut(s)	268
FalI	AAGNNNNNCTT	6 cut(s)	298, 330, 312, 344, 606, 638
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	179, 516
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	179, 516
FspBI	CTAG	2 cut(s)	135, 228
GluI	GCNGC	2 cut(s)	179, 516
GsaI	CCCAGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	3 cut(s)	261, 353, 556
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	4 cut(s)	281, 295, 382, 523
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	77, 265, 572
Hpy8I	GTNNAC	4 cut(s)	281, 295, 382, 523
HpyAV	CCTTC	2 cut(s)	137, 422
HpyCH4III	ACNGT	3 cut(s)	126, 235, 660
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	2 cut(s)	518, 566
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	73, 325, 460
LmnI	GCTCC	2 cut(s)	45, 224
LpnPI	CCDG	6 cut(s)	138, 361, 399, 474, 573, 585
Lsp1109I	GCAGC	2 cut(s)	190, 502
MaeI	CTAG	2 cut(s)	135, 228
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	126, 451, 484
MalI	GATC	3 cut(s)	75, 327, 462
MboI	GATC	3 cut(s)	73, 325, 460
MboII	GAAGA	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	73, 460
MluCI	AATT	6 cut(s)	6, 157, 192, 272, 336, 632
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	2 cut(s)	82, 418
MseI	TTAA	2 cut(s)	510, 654
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	6
NciI	CCSGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	3 cut(s)	73, 325, 460
NlaIII	CATG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	126, 451, 484
PaeR7I	CTCGAG	1 cut(s)	298
PagI	TCATGA	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	261, 353, 556
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	180, 517
PspFI	CCCAGC	1 cut(s)	385
PspPI	GGNCC	4 cut(s)	104, 246, 332, 345
PspXI	VCTCGAGB	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	2 cut(s)	73, 460
SaqAI	TTAA	2 cut(s)	510, 654
SatI	GCNGC	2 cut(s)	179, 516
Sau3AI	GATC	3 cut(s)	73, 325, 460
Sau96I	GGNCC	4 cut(s)	104, 246, 332, 345
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	8 cut(s)	32, 93, 154, 229, 251, 433, 507, 535
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	298
SinI	GGWCC	3 cut(s)	104, 246, 332
SlaI	CTCGAG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	6 cut(s)	6, 157, 192, 272, 336, 632
SspMI	CTAG	2 cut(s)	135, 228
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	126, 235, 660
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	299
TasI	AATT	6 cut(s)	6, 157, 192, 272, 336, 632
TfiI	GAWTC	3 cut(s)	261, 353, 556
Tru1I	TTAA	2 cut(s)	510, 654
Tru9I	TTAA	2 cut(s)	510, 654
TscAI	CASTG	3 cut(s)	129, 442, 525
TseFI	GTSAC	3 cut(s)	126, 451, 484
TseI	GCWGC	2 cut(s)	178, 515
Tsp45I	GTSAC	3 cut(s)	126, 451, 484
TspRI	CASTG	3 cut(s)	129, 442, 525
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	3 cut(s)	104, 246, 332
XapI	RAATTY	2 cut(s)	157, 632
XhoI	CTCGAG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	135, 228
ZraI	GACGTC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.