Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003145.1

Orthogroup ID

OG0017718

Physical Location & Seq

Genomic Coordinates Reverse (-)

59131 .. 60913

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003145.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggccattggagagaacagaagtactattccagtgaatgcgggagtggttcttgacatggatgattcgctaagtactgtttggttgagctgcatcaacatggccctgtcacttttatgcatctcgtggttcggcgaagacgaggctgcaacaagtccttccctcaccttcctccgaagttcgtatttattccaagctgcacaaaatgactcctctcaagtcaaagccataaatgctattgtccaagctttttggtggagaaaagctgtgccaatctacatagacaatgccttcggcgagggggtactaccctacttggtggatgccttgcaagaggttcgagctcgtgttccttaccagagtgccatacctccaaccgcaacaaatgaccaacttgttgagagctttacaagcgtttcgccaaagcacgagttgggaatgatgaaggaaggctacgtttggatcatgaccaatgggctaaccagtctgttgagtaacggttcagtcatcaactcaatgcaaggggcattggatgtttctggactatgggcatatgatgctgcctatgcattaggcatggcagttgagaatgttgccactagatcaacctttggcttccgaaagacaaatgattccatcaactcatcggcagatctcgaaactctcagggtctctagaaaaggtctagaaatttccaagttcttatcaagtactagatttagaggcggcattgcaggagatttcagttttgtcaacgggcagttacaatcaccgatgttcgaaattgttaatgtgaatggtaatggagtaagaggcattgggttgtggacaccacaacgtggacttgtgaaaagttcgaacgtacacctcaaaaatcacaaagagtggtgcgtaatcctagctgtcactaatggaacagaagtcactgagttctgcattgacatcatcaaggctgtaatggaaggattaccctacgcagttacttatgacttcatcccctttgcaaagcccgatggtactactgccggcagctacaatgacttggtccatcaagcttttcttgggctaaaatcatttcaactcatttactttctaacatcaatcctacataacaatactgatcgaaatgatatcaaatatagcgttacttcgattcatatgaacagaattcgatgctttggccacagcgacaacggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

399

Amino Acids

43.81

Weight (kDa)

5.68

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27990
rosa_chinensis	RchiOBHm_Chr1g0374931 RchiOBHm_Chr1g0374941 RchiOBHm_Chr6g0304571
rosa_multiflora	Rmu_co8270627.1_g000001 Rmu_co8277111.1_g000001 Rmu_sc0003145.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062580 Rroxscaffold_4G00294190 Rroxscaffold_4G00309270
rosa_rugosa	Rorug01G0386200
rosa_wichuraiana	Rw1G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	839
AciI	CCGC	3 cut(s)	41, 378, 726
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	2 cut(s)	3, 1180
AcsI	RAATTY	2 cut(s)	690, 1167
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	6 cut(s)	25, 76, 306, 712, 864, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	839
AgsI	TTSAA	1 cut(s)	1079
AluBI	AGCT	9 cut(s)	90, 197, 248, 266, 344, 405, 902, 1032, 1055
AluI	AGCT	9 cut(s)	90, 197, 248, 266, 344, 405, 902, 1032, 1055
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	3 cut(s)	3, 102, 1180
ApeKI	GCWGC	5 cut(s)	90, 146, 197, 560, 1029
ApoI	RAATTY	2 cut(s)	690, 1167
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspS9I	GGNCC	2 cut(s)	103, 1045
AsuHPI	GGTGA	2 cut(s)	157, 762
AsuII	TTCGAA	2 cut(s)	780, 857
AvaII	GGWCC	1 cut(s)	1045
BalI	TGGCCA	2 cut(s)	5, 1182
BanII	GRGCYC	1 cut(s)	346
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BauI	CACGAG	3 cut(s)	124, 345, 428
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	5 cut(s)	77, 133, 184, 547, 1041
BccI	CCATC	3 cut(s)	644, 1007, 1056
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	5 cut(s)	600, 675, 686, 714, 899
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	6 cut(s)	91, 147, 198, 561, 727, 1030
BlsI	GCNGC	6 cut(s)	92, 148, 199, 562, 728, 1031
BmcAI	AGTACT	3 cut(s)	25, 76, 712
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	2 cut(s)	103, 1045
BmsI	GCATC	5 cut(s)	102, 129, 313, 547, 1163
BpiI	GAAGAC	1 cut(s)	144
Bpu14I	TTCGAA	2 cut(s)	780, 857
BpuEI	CTTGAG	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	2 cut(s)	32, 483
Bse3DI	GCAATG	1 cut(s)	729
BseGI	GGATG	4 cut(s)	67, 328, 538, 993
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	679, 918
BseNI	ACTGG	2 cut(s)	32, 483
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	5 cut(s)	77, 133, 184, 547, 1041
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	5, 104, 1182
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	1026
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	5, 104, 1182
Bso31I	GGTCTC	1 cut(s)	676
Bsp119I	TTCGAA	2 cut(s)	780, 857
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	462, 602, 652, 1120
BspACI	CCGC	3 cut(s)	41, 378, 726
BspANI	GGCC	3 cut(s)	5, 104, 1182
BspCNI	CTCAG	2 cut(s)	678, 919
BspHI	TCATGA	1 cut(s)	465
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	2 cut(s)	780, 857
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	1025
BsrI	ACTGG	2 cut(s)	32, 483
BssAI	RCCGGY	1 cut(s)	1025
BssMI	GATC	4 cut(s)	462, 602, 652, 1120
BssSI	CACGAG	3 cut(s)	124, 345, 428
Bst2BI	CACGAG	3 cut(s)	124, 345, 428
Bst4CI	ACNGT	3 cut(s)	79, 500, 1196
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstBI	TTCGAA	2 cut(s)	780, 857
BstC8I	GCNNGC	1 cut(s)	1027
BstDEI	CTNAG	3 cut(s)	71, 665, 927
BstF5I	GGATG	4 cut(s)	67, 328, 538, 993
BstKTI	GATC	4 cut(s)	465, 605, 655, 1123
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	4 cut(s)	462, 602, 652, 1120
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 411, 557, 566
BstV1I	GCAGC	5 cut(s)	77, 133, 184, 547, 1041
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	5, 104, 1182
BtsCI	GGATG	4 cut(s)	67, 328, 538, 993
BtsIMutI	CAGTG	2 cut(s)	39, 924
Cac8I	GCNNGC	1 cut(s)	1027
CciI	TCATGA	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	1025
Cfr13I	GGNCC	2 cut(s)	103, 1045
Csp6I	GTAC	6 cut(s)	24, 75, 305, 711, 863, 1017
CviAII	CATG	4 cut(s)	58, 100, 466, 577
CviQI	GTAC	6 cut(s)	24, 75, 305, 711, 863, 1017
DdeI	CTNAG	3 cut(s)	71, 665, 927
DpnI	GATC	4 cut(s)	464, 604, 654, 1122
DpnII	GATC	4 cut(s)	462, 602, 652, 1120
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	2 cut(s)	3, 1180
Ecl136II	GAGCTC	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	1167
EcoRV	GATATC	1 cut(s)	1132
EcoT22I	ATGCAT	2 cut(s)	122, 571
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	4 cut(s)	61, 103, 469, 580
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FatI	CATG	4 cut(s)	57, 99, 465, 576
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	2 cut(s)	553, 1158
Fnu4HI	GCNGC	6 cut(s)	91, 147, 198, 561, 727, 1030
FokI	GGATG	4 cut(s)	74, 335, 545, 980
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	6 cut(s)	91, 147, 198, 561, 727, 1030
FspBI	CTAG	5 cut(s)	600, 675, 686, 714, 899
GluI	GCNGC	6 cut(s)	91, 147, 198, 561, 727, 1030
HaeIII	GGCC	3 cut(s)	5, 104, 1182
HapII	CCGG	1 cut(s)	1026
Hin1II	CATG	4 cut(s)	61, 103, 469, 580
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	2 cut(s)	246, 1053
HinfI	GANTC	4 cut(s)	65, 209, 632, 1153
HpaII	CCGG	1 cut(s)	1026
HphI	GGTGA	2 cut(s)	157, 762
Hpy166II	GTNNAC	4 cut(s)	754, 828, 842, 865
Hpy188I	TCNGA	2 cut(s)	176, 620
Hpy188III	TCNNGA	6 cut(s)	53, 466, 540, 656, 675, 686
Hpy8I	GTNNAC	4 cut(s)	754, 828, 842, 865
HpyAV	CCTTC	6 cut(s)	168, 178, 301, 439, 443, 956
HpyCH4III	ACNGT	3 cut(s)	79, 500, 1196
HpyCH4IV	ACGT	3 cut(s)	456, 838, 861
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 411, 557, 566
HpyF3I	CTNAG	3 cut(s)	71, 665, 927
HpySE526I	ACGT	3 cut(s)	456, 838, 861
Hsp92II	CATG	4 cut(s)	61, 103, 469, 580
KroI	GCCGGC	1 cut(s)	1025
KroNI	GCCGGC	1 cut(s)	1027
Kzo9I	GATC	4 cut(s)	462, 602, 652, 1120
LpnPI	CCDG	8 cut(s)	45, 119, 371, 496, 525, 652, 720, 1039
Lsp1109I	GCAGC	5 cut(s)	77, 133, 184, 547, 1041
LweI	GCATC	5 cut(s)	102, 129, 313, 547, 1163
MaeI	CTAG	5 cut(s)	600, 675, 686, 714, 899
MaeII	ACGT	3 cut(s)	456, 838, 861
MaeIII	GTNAC	7 cut(s)	108, 494, 762, 904, 922, 979, 1144
MalI	GATC	4 cut(s)	464, 604, 654, 1122
MboI	GATC	4 cut(s)	462, 602, 652, 1120
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	346
MlsI	TGGCCA	2 cut(s)	5, 1182
MluCI	AATT	3 cut(s)	690, 783, 1167
MluNI	TGGCCA	2 cut(s)	5, 1182
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	398
Mox20I	TGGCCA	2 cut(s)	5, 1182
Mph1103I	ATGCAT	2 cut(s)	122, 571
MroNI	GCCGGC	1 cut(s)	1025
MscI	TGGCCA	2 cut(s)	5, 1182
MseI	TTAA	1 cut(s)	789
MslI	CAYNNNNRTG	2 cut(s)	98, 115
Msp20I	TGGCCA	2 cut(s)	5, 1182
MspI	CCGG	1 cut(s)	1026
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	233, 411, 557, 566
NaeI	GCCGGC	1 cut(s)	1027
NdeI	CATATG	2 cut(s)	553, 1158
NdeII	GATC	4 cut(s)	462, 602, 652, 1120
NgoMIV	GCCGGC	1 cut(s)	1025
NlaIII	CATG	4 cut(s)	61, 103, 469, 580
NmuCI	GTSAC	3 cut(s)	108, 904, 922
NsiI	ATGCAT	2 cut(s)	122, 571
NspV	TTCGAA	2 cut(s)	780, 857
PagI	TCATGA	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	1027
PfeI	GAWTC	3 cut(s)	65, 632, 1153
PflFI	GACNNNGTC	1 cut(s)	1043
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	6 cut(s)	92, 148, 199, 562, 728, 1031
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	103, 1045
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	1043
RsaI	GTAC	6 cut(s)	25, 76, 306, 712, 864, 1018
RsaNI	GTAC	6 cut(s)	24, 75, 305, 711, 863, 1017
RseI	CAYNNNNRTG	2 cut(s)	98, 115
SacI	GAGCTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	6 cut(s)	91, 147, 198, 561, 727, 1030
Sau3AI	GATC	4 cut(s)	462, 602, 652, 1120
Sau96I	GGNCC	2 cut(s)	103, 1045
ScaI	AGTACT	3 cut(s)	25, 76, 712
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	5 cut(s)	102, 129, 313, 547, 1163
SfuI	TTCGAA	2 cut(s)	780, 857
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	2 cut(s)	98, 115
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	690, 783, 1167
SsiI	CCGC	3 cut(s)	41, 378, 726
SspMI	CTAG	5 cut(s)	600, 675, 686, 714, 899
SstI	GAGCTC	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	79, 500, 1196
TaiI	ACGT	3 cut(s)	459, 841, 864
TaqI	TCGA	7 cut(s)	340, 657, 780, 857, 1123, 1151, 1171
TasI	AATT	3 cut(s)	690, 783, 1167
TatI	WGTACW	3 cut(s)	23, 74, 710
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	3 cut(s)	65, 632, 1153
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	2 cut(s)	39, 931
TseFI	GTSAC	3 cut(s)	108, 904, 922
TseI	GCWGC	5 cut(s)	90, 146, 197, 560, 1029
Tsp45I	GTSAC	3 cut(s)	108, 904, 922
TspDTI	ATGAA	4 cut(s)	458, 982, 1145, 1175
TspRI	CASTG	2 cut(s)	39, 931
Tth111I	GACNNNGTC	1 cut(s)	1043
Van91I	CCANNNNNTGG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	2 cut(s)	690, 1167
XbaI	TCTAGA	2 cut(s)	674, 685
XspI	CTAG	5 cut(s)	600, 675, 686, 714, 899
ZrmI	AGTACT	3 cut(s)	25, 76, 712
Zsp2I	ATGCAT	2 cut(s)	122, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.