Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017718

Physical Location & Seq

Genomic Coordinates Forward (+)

30994286 .. 30997711

Gene Structure 3426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATACACTTAGAAAAGTGTATCCAAAATGGGTGGCCACTAGAGATTTTGCTAGTAGTGGATTCTACCTCGGTTCCAAAGGGATGGGAGATCCCAACAAATGGGAAGACGTTGAAAATAGGAGTTCCTAAGAAGTACGGCTATATTGAGTTCGTTAAGGTCACGAAAGATCCAAGGACTAACATAACAGATGTCACTGGGTTCTGTATTGATGTCTTTAAGGCAGTTGTGGAAATATTACCATATGCTCTTCCTTATGAGTTCATTCCTTTTACAAAGCAAGATGGCGCGAGCGCTGGCAGTTATAATGATCTGTGCTATGAAGTATATCGTGGGATGATATTCAAAAGGATGGAAGACGTTGATGATGACTACAGCAAGGAGGTGGAGATGCTTCATGGCTTTCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

5.15

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27990
rosa_chinensis	RchiOBHm_Chr1g0374931 RchiOBHm_Chr1g0374941 RchiOBHm_Chr6g0304571
rosa_multiflora	Rmu_co8270627.1_g000001 Rmu_co8277111.1_g000001 Rmu_sc0003145.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062580 Rroxscaffold_4G00294190 Rroxscaffold_4G00309270
rosa_rugosa	Rorug01G0386200
rosa_wichuraiana	Rw1G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	290
AclWI	GGATC	2 cut(s)	85, 164
AcoI	YGGCCR	1 cut(s)	35
AfaI	GTAC	1 cut(s)	137
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	115, 346
AlwI	GGATC	2 cut(s)	85, 164
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	290, 296
BalI	TGGCCA	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	113, 363
BccI	CCATC	3 cut(s)	78, 278, 346
BceAI	ACGGC	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	41, 53
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	113, 363
BsaJI	CCNNGG	2 cut(s)	69, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	69, 173
BseGI	GGATG	3 cut(s)	89, 342, 357
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	90, 169, 310
BspANI	GGCC	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	85, 164
BspQI	GCTCTTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	69, 173
BssMI	GATC	3 cut(s)	90, 169, 310
BssT1I	CCWWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	292, 298
BstDEI	CTNAG	2 cut(s)	10, 129
BstF5I	GGATG	3 cut(s)	89, 342, 357
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	290, 296
BstKTI	GATC	3 cut(s)	93, 172, 313
BstMBI	GATC	3 cut(s)	90, 169, 310
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	290
BstV2I	GAAGAC	2 cut(s)	113, 363
BstX2I	RGATCY	2 cut(s)	90, 169
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	2 cut(s)	90, 169
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	89, 342, 357
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	292, 298
CfoI	GCGC	2 cut(s)	290, 296
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	14, 49
CviAII	CATG	2 cut(s)	398, 407
CviJI	RGCY	3 cut(s)	37, 141, 402
CviKI_1	RGCY	3 cut(s)	37, 141, 402
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	10, 129
DpnI	GATC	3 cut(s)	92, 171, 312
DpnII	GATC	3 cut(s)	90, 169, 310
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	401, 410
FatI	CATG	2 cut(s)	397, 406
FauNDI	CATATG	1 cut(s)	244
FokI	GGATG	3 cut(s)	96, 349, 364
FspBI	CTAG	2 cut(s)	41, 53
GlaI	GCGC	2 cut(s)	289, 295
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	290, 296
Hin1II	CATG	2 cut(s)	401, 410
Hin6I	GCGC	2 cut(s)	288, 294
HinP1I	GCGC	2 cut(s)	288, 294
HinfI	GANTC	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	110, 360
HpyF3I	CTNAG	2 cut(s)	10, 129
HpySE526I	ACGT	2 cut(s)	110, 360
Hsp92II	CATG	2 cut(s)	401, 410
HspAI	GCGC	2 cut(s)	288, 294
Kzo9I	GATC	3 cut(s)	90, 169, 310
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	2 cut(s)	183, 282
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	41, 53
MaeII	ACGT	2 cut(s)	110, 360
MaeIII	GTNAC	2 cut(s)	160, 193
MalI	GATC	3 cut(s)	92, 171, 312
MboI	GATC	3 cut(s)	90, 169, 310
MboII	GAAGA	3 cut(s)	118, 242, 368
MflI	RGATCY	2 cut(s)	90, 169
MlsI	TGGCCA	1 cut(s)	37
MluNI	TGGCCA	1 cut(s)	37
MnlI	CCTC	2 cut(s)	79, 376
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	2 cut(s)	156, 219
Msp20I	TGGCCA	1 cut(s)	37
MvnI	CGCG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	90, 169, 310
NlaIII	CATG	2 cut(s)	401, 410
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	160, 193
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	90, 169
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	156, 219
Sau3AI	GATC	3 cut(s)	90, 169, 310
SetI	ASST	5 cut(s)	71, 113, 162, 363, 387
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	373
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	41, 53
StyI	CCWWGG	1 cut(s)	173
TaiI	ACGT	2 cut(s)	113, 363
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	156, 219
Tru9I	TTAA	2 cut(s)	156, 219
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	160, 193
Tsp45I	GTSAC	2 cut(s)	160, 193
TspDTI	ATGAA	4 cut(s)	253, 336, 386, 395
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	41, 53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.