RchiOBHm_Chr7g0184151

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018210
Physical Location & Seq
Forward (+)
4852466 .. 4853632
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16431

Sequence Viewer

Length: 1167 bp
ATGGAGTACCTCCCGCAGGACCTAATACATGAAATTGTTTTAAGACTCCCTGTGAAGTGTCTAATCCGATTTTCTTTCGTTTCAAAGCTATGGAAGGCTGTCATCCACAGCAAAGACTTCATTCGAAAGCATCGTCAACGCTTTAATCTCAACCACTTAAATGATTTTGCCCTCATTCGCCATCATGTTGAATCTGATCCTCATGATCACTTCTATTCAGTAACCTTTTCTGGTGATGATACCACGTTAGAAGAAGAACGATTGAAGCATCCATTATATTCCCTTGAAGAAAGTGATAGACTTGGGCTTCAATCTGGCATCGTTGCTTTTTGCAATGGATTGATTTTACTTCATGTTAGAAGTAAGAAATATGATCTTGGTCTCTTTTTATGGAACCCCATGATTTCAAAGCATAAAATTATACCCACCCCCTTCAAATGGGCACGAGGACAATTCTCGAATCGGATGTACGGATTGGGCTATCATTCTGCTGAAGATGACTTGAAGGTGTTGGTTCTTACCGAAGATCATGATAATAGGTCGCATTCTCTTTTTGGACAAATAAATTTGACGATGGATTTAAAAGTCTACAGCGTAGCATTAAACAGATGGAAAAGGATAGAAAAGCTTCCACCCAGTAATCTTCGAATTTATGTAAATCATCAATCGAATATGGTGTCAATGAACGATTCTCGTGTAGCTTGGCTTATGAGAGACAATGATCAATTAGATCTGTACATGGTTGTGACTTTTGATCTTGTGAAGGAGGAGTATCAGTTTTTTCGTGTTCCGATTCTTATTCGGGGTCCGGGAGTAGTAAAACTGATGGCATTCGGAGGCTTCTTATGCTTTTTGCGCTGTTATACAGGTGACTGTATAAATGTTTGGTTTACAAAAGATTGCGATTCTTGCTGGTCGTTGGAGCCTGTTGTGTTGAATTGCGAGCCTTTATTCTTTGATGGTGAGAGGTTTCTCTTGAACCATGATGGCAATGATAAACTGATTTGGTACAATATAAAGACACAAAAACATGATTATGGGACTGAAATTCGTTGGCATACTCGCAGCAATCGGTGTACAGAAACAACTCTATGTGTGGGAGACCTCAGTCTTCTACTTGATGCTGATCCTGATGGTCGTCGTAGCTACTTTGGCCATTTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

388

Amino Acids

45.64

Weight (kDa)

7.02

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 42 2e-09 F-box domain
FBA_3 PF08268 105 - 313 6.2e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018210)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184151 RchiOBHm_Chr7g0188081
rosa_laevigata RLG00000004728
rosa_multiflora Rmu_co8443907.1_g000001
rosa_rugosa Rorug06G0463300 Rorug06G0488200
rosa_samantha Rh7BG064500 Rh7CG093300 Rh7DG064800 Rh7DG094300
rosa_wichuraiana Rw0G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 588
AciI CCGC 1 cut(s) 14
AclWI GGATC 2 cut(s) 191, 1121
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 3 cut(s) 565, 648, 1047
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 5 cut(s) 8, 470, 737, 1010, 1078
AfiI CCNNNNNNNGG 2 cut(s) 16, 438
AluBI AGCT 4 cut(s) 88, 628, 701, 1146
AluI AGCT 4 cut(s) 88, 628, 701, 1146
Alw26I GTCTC 3 cut(s) 386, 708, 1095
AlwI GGATC 2 cut(s) 191, 1121
AoxI GGCC 1 cut(s) 1153
ApeKI GCWGC 1 cut(s) 1065
ApoI RAATTY 3 cut(s) 565, 648, 1047
ArsI GACNNNNNNTTYG 4 cut(s) 118, 150, 662, 694
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 2 cut(s) 19, 806
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 3 cut(s) 245, 881, 974
AsuII TTCGAA 2 cut(s) 124, 646
AvaII GGWCC 2 cut(s) 19, 806
BaeGI GKGCMC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 1155
BauI CACGAG 2 cut(s) 444, 693
BbsI GAAGAC 1 cut(s) 1103
BbvI GCAGC 1 cut(s) 1077
BccI CCATC 7 cut(s) 189, 568, 603, 820, 953, 980, 1127
BclI TGATCA 2 cut(s) 205, 721
BcnI CCSGG 1 cut(s) 810
BcoDI GTCTC 3 cut(s) 386, 708, 1095
BfmI CTRYAG 1 cut(s) 589
BglII AGATCT 1 cut(s) 730
BisI GCNGC 1 cut(s) 1066
BlsI GCNGC 1 cut(s) 1067
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 2 cut(s) 19, 806
BmgT120I GGNCC 2 cut(s) 19, 806
BmiI GGNNCC 3 cut(s) 395, 807, 924
BmrFI CCNGG 1 cut(s) 810
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 4 cut(s) 139, 277, 327, 1111
BmuI ACTGGG 1 cut(s) 630
BoxI GACNNNNGTC 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 1103
Bpu14I TTCGAA 2 cut(s) 124, 646
BpuMI CCSGG 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 2 cut(s) 386, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 438
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 2 cut(s) 340, 997
Bse8I GATNNNNATC 1 cut(s) 1125
BseGI GGATG 3 cut(s) 102, 268, 471
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 2 cut(s) 16, 438
BseMI GCAATG 2 cut(s) 340, 997
BseMII CTCAG 1 cut(s) 1120
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 1 cut(s) 1077
BshFI GGCC 1 cut(s) 1155
BsiSI CCGG 1 cut(s) 809
BslFI GGGAC 1 cut(s) 1054
BslI CCNNNNNNNGG 2 cut(s) 16, 438
BsmAI GTCTC 3 cut(s) 386, 708, 1095
BsmFI GGGAC 1 cut(s) 1054
BsmI GAATGC 2 cut(s) 544, 830
BsnI GGCC 1 cut(s) 1155
Bso31I GGTCTC 2 cut(s) 386, 1095
Bsp119I TTCGAA 2 cut(s) 124, 646
Bsp1286I GDGCHC 1 cut(s) 445
Bsp1407I TGTACA 2 cut(s) 735, 1076
Bsp143I GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 1155
BspCNI CTCAG 1 cut(s) 1119
BspHI TCATGA 2 cut(s) 202, 529
BspLI GGNNCC 3 cut(s) 395, 807, 924
BspPI GGATC 2 cut(s) 191, 1121
BspT104I TTCGAA 2 cut(s) 124, 646
BspTNI GGTCTC 2 cut(s) 386, 1095
BsrDI GCAATG 2 cut(s) 340, 997
BsrGI TGTACA 2 cut(s) 735, 1076
BsrI ACTGG 1 cut(s) 636
BssMI GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
BssSI CACGAG 2 cut(s) 444, 693
Bst2BI CACGAG 2 cut(s) 444, 693
Bst4CI ACNGT 1 cut(s) 875
BstAUI TGTACA 2 cut(s) 735, 1076
BstBI TTCGAA 2 cut(s) 124, 646
BstC8I GCNNGC 1 cut(s) 944
BstDEI CTNAG 1 cut(s) 1106
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 102, 268, 471
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 8 cut(s) 199, 208, 376, 529, 724, 733, 757, 1129
BstMAI GTCTC 3 cut(s) 386, 708, 1095
BstMBI GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
BstMWI GCNNNNNNNGC 4 cut(s) 846, 855, 909, 1152
BstPAI GACNNNNGTC 1 cut(s) 1107
BstSCI CCNGG 1 cut(s) 808
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 1077
BstV2I GAAGAC 1 cut(s) 1103
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 1 cut(s) 1155
BtsCI GGATG 3 cut(s) 102, 268, 471
Cac8I GCNNGC 1 cut(s) 944
CciI TCATGA 2 cut(s) 202, 529
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 2 cut(s) 19, 806
Csp6I GTAC 5 cut(s) 7, 469, 736, 1009, 1077
CviAII CATG 9 cut(s) 29, 185, 203, 353, 400, 530, 739, 983, 1031
CviQI GTAC 5 cut(s) 7, 469, 736, 1009, 1077
DdeI CTNAG 1 cut(s) 1106
DpnI GATC 8 cut(s) 198, 207, 375, 528, 723, 732, 756, 1128
DpnII GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
DraI TTTAAA 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 1153
Eco31I GGTCTC 2 cut(s) 386, 1095
Eco47I GGWCC 2 cut(s) 19, 806
Eco57I CTGAAG 1 cut(s) 513
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 19
FaeI CATG 9 cut(s) 32, 188, 206, 356, 403, 533, 742, 986, 1034
FaqI GGGAC 1 cut(s) 1054
FatI CATG 9 cut(s) 28, 184, 202, 352, 399, 529, 738, 982, 1030
FauI CCCGC 1 cut(s) 21
FbaI TGATCA 2 cut(s) 205, 721
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 1 cut(s) 1066
FokI GGATG 3 cut(s) 89, 255, 478
Fsp4HI GCNGC 1 cut(s) 1066
GlaI GCGC 1 cut(s) 857
GluI GCNGC 1 cut(s) 1066
HaeIII GGCC 1 cut(s) 1155
HapII CCGG 1 cut(s) 809
HhaI GCGC 1 cut(s) 858
Hin1II CATG 9 cut(s) 32, 188, 206, 356, 403, 533, 742, 986, 1034
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 6 cut(s) 45, 191, 460, 689, 793, 905
HpaII CCGG 1 cut(s) 809
HphI GGTGA 3 cut(s) 245, 881, 974
Hpy166II GTNNAC 4 cut(s) 137, 589, 891, 1077
Hpy188I TCNGA 5 cut(s) 68, 196, 465, 792, 836
Hpy188III TCNNGA 5 cut(s) 203, 457, 530, 976, 1130
Hpy8I GTNNAC 4 cut(s) 137, 589, 891, 1077
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 4 cut(s) 88, 442, 499, 757
HpyCH4III ACNGT 1 cut(s) 875
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 846, 855, 909, 1152
HpyF3I CTNAG 1 cut(s) 1106
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 9 cut(s) 32, 188, 206, 356, 403, 533, 742, 986, 1034
HspAI GCGC 1 cut(s) 856
Ksp22I TGATCA 2 cut(s) 205, 721
Kzo9I GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 1 cut(s) 1077
LweI GCATC 4 cut(s) 139, 277, 327, 1111
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 220, 745, 869
MalI GATC 8 cut(s) 198, 207, 375, 528, 723, 732, 756, 1128
MboI GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
MboII GAAGA 7 cut(s) 263, 266, 299, 506, 536, 635, 1103
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 1155
MluCI AATT 8 cut(s) 33, 417, 452, 565, 648, 725, 937, 1047
MluNI TGGCCA 1 cut(s) 1155
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 900
MnlI CCTC 8 cut(s) 20, 182, 210, 440, 760, 830, 960, 1115
Mox20I TGGCCA 1 cut(s) 1155
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 1155
MseI TTAA 5 cut(s) 41, 144, 158, 581, 602
MslI CAYNNNNRTG 3 cut(s) 159, 743, 1035
Msp20I TGGCCA 1 cut(s) 1155
MspI CCGG 1 cut(s) 809
MspR9I CCNGG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 544, 830
MwoI GCNNNNNNNGC 4 cut(s) 846, 855, 909, 1152
NciI CCSGG 1 cut(s) 810
NdeII GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
NlaIII CATG 9 cut(s) 32, 188, 206, 356, 403, 533, 742, 986, 1034
NlaIV GGNNCC 3 cut(s) 395, 807, 924
NmuCI GTSAC 2 cut(s) 745, 869
NspV TTCGAA 2 cut(s) 124, 646
PagI TCATGA 2 cut(s) 202, 529
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 2 cut(s) 544, 830
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 5 cut(s) 191, 460, 689, 793, 905
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 1 cut(s) 1067
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 395, 807, 924
PspPI GGNCC 2 cut(s) 19, 806
PspPPI RGGWCCY 1 cut(s) 19
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 5 cut(s) 8, 470, 737, 1010, 1078
RsaNI GTAC 5 cut(s) 7, 469, 736, 1009, 1077
RseI CAYNNNNRTG 3 cut(s) 159, 743, 1035
SaqAI TTAA 5 cut(s) 41, 144, 158, 581, 602
SatI GCNGC 1 cut(s) 1066
Sau3AI GATC 8 cut(s) 196, 205, 373, 526, 721, 730, 754, 1126
Sau96I GGNCC 2 cut(s) 19, 806
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 4 cut(s) 139, 277, 327, 1111
SfcI CTRYAG 1 cut(s) 589
SfuI TTCGAA 2 cut(s) 124, 646
SinI GGWCC 2 cut(s) 19, 806
SmiMI CAYNNNNRTG 3 cut(s) 159, 743, 1035
Sse9I AATT 8 cut(s) 33, 417, 452, 565, 648, 725, 937, 1047
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 808
TaaI ACNGT 1 cut(s) 875
TaiI ACGT 1 cut(s) 248
TaqI TCGA 4 cut(s) 124, 458, 646, 668
TasI AATT 8 cut(s) 33, 417, 452, 565, 648, 725, 937, 1047
TatI WGTACW 2 cut(s) 735, 1076
TfiI GAWTC 5 cut(s) 191, 460, 689, 793, 905
Tru1I TTAA 5 cut(s) 41, 144, 158, 581, 602
Tru9I TTAA 5 cut(s) 41, 144, 158, 581, 602
TseFI GTSAC 2 cut(s) 745, 869
TseI GCWGC 1 cut(s) 1065
Tsp45I GTSAC 2 cut(s) 745, 869
TspDTI ATGAA 4 cut(s) 45, 109, 341, 698
TspGWI ACGGA 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 19, 806
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 3 cut(s) 565, 648, 1047
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.