Rh7CG093300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018210
Physical Location & Seq
Reverse (-)
7028944 .. 7029429
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG093300.1

Sequence Viewer

Length: 486 bp
ATGGTGTCGTTGAGCGATTCTCGTGTAGCTTGGCTGATGAGAGATGTTGATTATATGGATCTGTACCATGTTGTGACTTTTGACCTTGTGAAGGAGGAGTATAATACTTGTCGGGTTCCGATTTCTATTCGTGGTCCAGGGGCTATGACGCTGATGGAACTGGGAGGCTTCCTGTGCTTTAGGCATGGTGAAAATATTTGGTTCATGAAGGATTCTTCTTGGTCGACCGAGCCTATTCCTCTGAATAATTCCAGGCCTCTATTCTTTGATGGTGAGAGGTTTCTGTTGGGCAGGTTTTCTGGTGATCATAAGGAGCTCTTTTGGTACAACATAAAGACACAAGATCATCAACATGTGACGCGAACTGGTGACTATGCTGGAAGCTTTGATGGGGCTACTACTCAGACAGCTTTCATTTGTGGAGGAAACCTCCGTTTTCTCCTCGATGGTCAACCTGATCTGTATGCCTATGTCTGTCGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

161

Amino Acids

18.55

Weight (kDa)

5.45

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018210)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184151 RchiOBHm_Chr7g0188081
rosa_laevigata RLG00000004728
rosa_multiflora Rmu_co8443907.1_g000001
rosa_rugosa Rorug06G0463300 Rorug06G0488200
rosa_samantha Rh7BG064500 Rh7CG093300 Rh7DG064800 Rh7DG094300
rosa_wichuraiana Rw0G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 282
AccI GTMKAC 1 cut(s) 224
AccII CGCG 1 cut(s) 361
AclWI GGATC 1 cut(s) 66
AfaI GTAC 2 cut(s) 65, 326
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 352
AjnI CCWGG 2 cut(s) 136, 251
AluBI AGCT 4 cut(s) 29, 316, 384, 410
AluI AGCT 4 cut(s) 29, 316, 384, 410
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 1 cut(s) 66
AoxI GGCC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 4 cut(s) 200, 284, 314, 380
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 318
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 4 cut(s) 148, 263, 383, 440
BciT130I CCWGG 2 cut(s) 138, 253
BclI TGATCA 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 282
Bme1390I CCNGG 2 cut(s) 138, 253
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 138, 253
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BplI GAGNNNNNCTC 3 cut(s) 36, 414, 446
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 165, 370
BseBI CCWGG 2 cut(s) 138, 253
BseDI CCNNGG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 165, 370
BseRI GAGGAG 2 cut(s) 110, 431
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 4 cut(s) 58, 304, 343, 457
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 165, 370
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 4 cut(s) 58, 304, 343, 457
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 138, 253
BstDEI CTNAG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 361
BstKTI GATC 4 cut(s) 61, 307, 346, 460
BstMBI GATC 4 cut(s) 58, 304, 343, 457
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 138, 253
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 136, 251
BstUI CGCG 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 256
BveI ACCTGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 2 cut(s) 157, 367
Csp6I GTAC 2 cut(s) 64, 325
CviAII CATG 4 cut(s) 68, 185, 205, 353
CviQI GTAC 2 cut(s) 64, 325
DdeI CTNAG 1 cut(s) 402
DpnI GATC 4 cut(s) 60, 306, 345, 459
DpnII GATC 4 cut(s) 58, 304, 343, 457
Ecl136II GAGCTC 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 136, 251
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 4 cut(s) 71, 188, 208, 356
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 1 cut(s) 465
FatI CATG 4 cut(s) 67, 184, 204, 352
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 256
HgaI GACGC 2 cut(s) 157, 367
Hin1II CATG 4 cut(s) 71, 188, 208, 356
HincII GTYRAC 2 cut(s) 225, 452
HindII GTYRAC 2 cut(s) 225, 452
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 2 cut(s) 17, 212
HphI GGTGA 4 cut(s) 200, 284, 314, 380
Hpy166II GTNNAC 2 cut(s) 225, 452
Hpy188I TCNGA 3 cut(s) 120, 243, 405
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 225, 452
HpyAV CCTTC 2 cut(s) 85, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 4 cut(s) 71, 188, 208, 356
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 4 cut(s) 58, 304, 343, 457
LmnI GCTCC 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 73, 355, 368
MalI GATC 4 cut(s) 60, 306, 345, 459
MboI GATC 4 cut(s) 58, 304, 343, 457
MboII GAAGA 1 cut(s) 207
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 1 cut(s) 247
MnlI CCTC 8 cut(s) 88, 158, 249, 267, 270, 416, 440, 452
MslI CAYNNNNRTG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 138, 253
MvaI CCWGG 2 cut(s) 138, 253
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 4 cut(s) 58, 304, 343, 457
NlaIII CATG 4 cut(s) 71, 188, 208, 356
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 3 cut(s) 73, 355, 368
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 204
PceI AGGCCT 1 cut(s) 256
PciI ACATGT 1 cut(s) 352
PfeI GAWTC 2 cut(s) 17, 212
PscI ACATGT 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 136, 251
PspGI CCWGG 2 cut(s) 136, 251
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 65, 326
RsaNI GTAC 2 cut(s) 64, 325
RseI CAYNNNNRTG 1 cut(s) 351
SacI GAGCTC 1 cut(s) 318
SalI GTCGAC 1 cut(s) 223
Sau3AI GATC 4 cut(s) 58, 304, 343, 457
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 138, 253
SduI GDGCHC 1 cut(s) 318
SetI ASST 9 cut(s) 31, 87, 281, 296, 318, 386, 412, 432, 457
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 256
SspI AATATT 1 cut(s) 196
SstI GAGCTC 1 cut(s) 318
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 136, 251
TaqI TCGA 2 cut(s) 224, 444
TaqII GACCGA 1 cut(s) 242
TasI AATT 1 cut(s) 247
TfiI GAWTC 2 cut(s) 17, 212
TseFI GTSAC 3 cut(s) 73, 355, 368
Tsp45I GTSAC 3 cut(s) 73, 355, 368
TspDTI ATGAA 3 cut(s) 193, 221, 403
TspGWI ACGGA 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 134
XagI CCTNNNNNAGG 1 cut(s) 89
XceI RCATGY 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.