Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443907.1

Orthogroup ID

OG0018210

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1122

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443907.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

aagtgtctaatccgattttctttcgtttcaaagctatggaaggctgtcatccacagcaaagacttcattcgaaagcatcgtcaacgctttaatctcaaccacttaaatgattttgccctcattcgccatcgtgttgaatctgatcctcataatcacttctattcagtaaccttttctggtgatgataccacgttagaagaagaacgattgaagcatccattatattccctcgaagaaagtgatcgacttgggcttcaatctggcatcgttgccctttgcaatggattgattttacttcatgttagaagtaagaaatatgatcttggtctctttttatggaaccccatgatttcaaagcataaaattatacccacccccttcaaatgggcacgaggacaattctcgaatcggatgtacggattgggctatcattctgctgaagatgacttgaaggtgttggttcttaccgaagaccatgataataggtcgaattctctttttggacaaataaatttgacgatggatttaaaagtgtacagcgtagcattaaacagatggaaaaggatagaaaagcttccacccagtaatcttcgaatttatgtaaatcatcaatcgaatatggtgtcaatgaacgattctcgtgtagcttggctgatgagagacaatgatcaattagatctgtacatggttgtgacttttgatcttgtgaaggaggagtatcagttttttcgtgttccgattcttattcggggtccgggagtagtaaaactgatggcattcggaggcttcttatgctttttgcgctgttatacaggtgactgtataaatgtttggtttacaaaagattgcgattcttgctggtcgttggagcctgttgtgttgaattgccagcctttattctttgatggtgagaggtttctcttgaaccagttgaaccatgatggcaatgataaactgatttggtacaatataaagacacaaaaacatgattatgggacagaaattcgtcggcatactcgcagcaatcggtgtacagaaacaactgtatgtgtgggagacctcagtcttctacttgatgctgatcctgatggtcgtcgtagctactttggccatttattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

373

Amino Acids

43.75

Weight (kDa)

8.59

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184151 RchiOBHm_Chr7g0188081
rosa_laevigata	RLG00000004728
rosa_multiflora	Rmu_co8443907.1_g000001
rosa_rugosa	Rorug06G0463300 Rorug06G0488200
rosa_samantha	Rh7BG064500 Rh7CG093300 Rh7DG064800 Rh7DG094300
rosa_wichuraiana	Rw0G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	137, 1076
AcoI	YGGCCR	1 cut(s)	1108
AcsI	RAATTY	4 cut(s)	490, 511, 594, 1002
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	5 cut(s)	416, 536, 683, 965, 1033
AfiI	CCNNNNNNNGG	1 cut(s)	384
AluBI	AGCT	4 cut(s)	34, 574, 647, 1101
AluI	AGCT	4 cut(s)	34, 574, 647, 1101
Alw26I	GTCTC	3 cut(s)	332, 654, 1050
AlwI	GGATC	2 cut(s)	137, 1076
AoxI	GGCC	1 cut(s)	1108
ApeKI	GCWGC	1 cut(s)	1020
ApoI	RAATTY	4 cut(s)	490, 511, 594, 1002
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 608, 640
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	756
AsuHPI	GGTGA	3 cut(s)	191, 827, 920
AsuII	TTCGAA	2 cut(s)	70, 592
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	1110
BauI	CACGAG	2 cut(s)	390, 639
BbsI	GAAGAC	2 cut(s)	477, 1058
BbvI	GCAGC	1 cut(s)	1032
BccI	CCATC	7 cut(s)	135, 514, 549, 766, 899, 935, 1082
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	332, 654, 1050
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	1 cut(s)	1021
BlsI	GCNGC	1 cut(s)	1022
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	3 cut(s)	341, 753, 870
BmrFI	CCNGG	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	4 cut(s)	85, 223, 273, 1066
BmuI	ACTGGG	1 cut(s)	576
BoxI	GACNNNNGTC	1 cut(s)	1062
BpiI	GAAGAC	2 cut(s)	477, 1058
Bpu14I	TTCGAA	2 cut(s)	70, 592
BpuMI	CCSGG	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaI	GGTCTC	2 cut(s)	332, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	582, 928
Bse3DI	GCAATG	2 cut(s)	286, 952
Bse8I	GATNNNNATC	1 cut(s)	1080
BseGI	GGATG	3 cut(s)	48, 214, 417
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	2 cut(s)	286, 952
BseMII	CTCAG	1 cut(s)	1075
BseNI	ACTGG	2 cut(s)	582, 928
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	1032
BshFI	GGCC	1 cut(s)	1110
BsiSI	CCGG	1 cut(s)	755
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	3 cut(s)	332, 654, 1050
BsmFI	GGGAC	1 cut(s)	1009
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	1 cut(s)	1110
Bso31I	GGTCTC	2 cut(s)	332, 1050
Bsp119I	TTCGAA	2 cut(s)	70, 592
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp1407I	TGTACA	3 cut(s)	534, 681, 1031
Bsp143I	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
BspANI	GGCC	1 cut(s)	1110
BspCNI	CTCAG	1 cut(s)	1074
BspLI	GGNNCC	3 cut(s)	341, 753, 870
BspPI	GGATC	2 cut(s)	137, 1076
BspT104I	TTCGAA	2 cut(s)	70, 592
BspTNI	GGTCTC	2 cut(s)	332, 1050
BsrDI	GCAATG	2 cut(s)	286, 952
BsrGI	TGTACA	3 cut(s)	534, 681, 1031
BsrI	ACTGG	2 cut(s)	582, 928
BssMI	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
BssSI	CACGAG	2 cut(s)	390, 639
Bst2BI	CACGAG	2 cut(s)	390, 639
Bst4CI	ACNGT	2 cut(s)	821, 1045
BstAUI	TGTACA	3 cut(s)	534, 681, 1031
BstBI	TTCGAA	2 cut(s)	70, 592
BstC8I	GCNNGC	1 cut(s)	890
BstDEI	CTNAG	1 cut(s)	1061
BstF5I	GGATG	3 cut(s)	48, 214, 417
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	7 cut(s)	145, 244, 322, 670, 679, 703, 1084
BstMAI	GTCTC	3 cut(s)	332, 654, 1050
BstMBI	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
BstMWI	GCNNNNNNNGC	4 cut(s)	792, 801, 855, 1107
BstPAI	GACNNNNGTC	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	1032
BstV2I	GAAGAC	2 cut(s)	477, 1058
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	1110
BtsCI	GGATG	3 cut(s)	48, 214, 417
Cac8I	GCNNGC	1 cut(s)	890
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	752
Csp6I	GTAC	5 cut(s)	415, 535, 682, 964, 1032
CviAII	CATG	6 cut(s)	299, 346, 476, 685, 938, 986
CviQI	GTAC	5 cut(s)	415, 535, 682, 964, 1032
DdeI	CTNAG	1 cut(s)	1061
DpnI	GATC	7 cut(s)	144, 243, 321, 669, 678, 702, 1083
DpnII	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
DraI	TTTAAA	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	1108
Eco31I	GGTCTC	2 cut(s)	332, 1050
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	490
FaeI	CATG	6 cut(s)	302, 349, 479, 688, 941, 989
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	6 cut(s)	298, 345, 475, 684, 937, 985
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	1021
FokI	GGATG	3 cut(s)	35, 201, 424
Fsp4HI	GCNGC	1 cut(s)	1021
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	1 cut(s)	1021
HaeIII	GGCC	1 cut(s)	1110
HapII	CCGG	1 cut(s)	755
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	6 cut(s)	302, 349, 479, 688, 941, 989
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	137, 406, 635, 739, 851
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	3 cut(s)	191, 827, 920
Hpy166II	GTNNAC	4 cut(s)	83, 535, 837, 1032
Hpy188I	TCNGA	5 cut(s)	14, 142, 411, 738, 782
Hpy188III	TCNNGA	3 cut(s)	403, 922, 1085
Hpy8I	GTNNAC	4 cut(s)	83, 535, 837, 1032
Hpy99I	CGWCG	2 cut(s)	1011, 1098
HpyAV	CCTTC	4 cut(s)	34, 388, 445, 703
HpyCH4III	ACNGT	2 cut(s)	821, 1045
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	792, 801, 855, 1107
HpyF3I	CTNAG	1 cut(s)	1061
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	6 cut(s)	302, 349, 479, 688, 941, 989
HspAI	GCGC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	1 cut(s)	1032
LweI	GCATC	4 cut(s)	85, 223, 273, 1066
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	166, 691, 815
MalI	GATC	7 cut(s)	144, 243, 321, 669, 678, 702, 1083
MboI	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
MboII	GAAGA	7 cut(s)	209, 212, 245, 452, 482, 581, 1058
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	1110
MluCI	AATT	8 cut(s)	363, 398, 490, 511, 594, 671, 883, 1002
MluNI	TGGCCA	1 cut(s)	1110
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	8 cut(s)	128, 156, 239, 386, 706, 776, 906, 1070
Mox20I	TGGCCA	1 cut(s)	1110
MroXI	GAANNNNTTC	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	1110
MseI	TTAA	4 cut(s)	90, 104, 527, 548
MslI	CAYNNNNRTG	3 cut(s)	105, 689, 990
Msp20I	TGGCCA	1 cut(s)	1110
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	776
MwoI	GCNNNNNNNGC	4 cut(s)	792, 801, 855, 1107
NciI	CCSGG	1 cut(s)	756
NdeII	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
NlaIII	CATG	6 cut(s)	302, 349, 479, 688, 941, 989
NlaIV	GGNNCC	3 cut(s)	341, 753, 870
NmuCI	GTSAC	2 cut(s)	691, 815
NspV	TTCGAA	2 cut(s)	70, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	1 cut(s)	776
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	5 cut(s)	137, 406, 635, 739, 851
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	1 cut(s)	1022
PshAI	GACNNNNGTC	1 cut(s)	1062
PspN4I	GGNNCC	3 cut(s)	341, 753, 870
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	5 cut(s)	416, 536, 683, 965, 1033
RsaNI	GTAC	5 cut(s)	415, 535, 682, 964, 1032
RseI	CAYNNNNRTG	3 cut(s)	105, 689, 990
SaqAI	TTAA	4 cut(s)	90, 104, 527, 548
SatI	GCNGC	1 cut(s)	1021
Sau3AI	GATC	7 cut(s)	142, 241, 319, 667, 676, 700, 1081
Sau96I	GGNCC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	4 cut(s)	85, 223, 273, 1066
SfuI	TTCGAA	2 cut(s)	70, 592
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	3 cut(s)	105, 689, 990
Sse9I	AATT	8 cut(s)	363, 398, 490, 511, 594, 671, 883, 1002
StyD4I	CCNGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	821, 1045
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	7 cut(s)	70, 231, 244, 404, 488, 592, 614
TasI	AATT	8 cut(s)	363, 398, 490, 511, 594, 671, 883, 1002
TatI	WGTACW	3 cut(s)	534, 681, 1031
TfiI	GAWTC	5 cut(s)	137, 406, 635, 739, 851
Tru1I	TTAA	4 cut(s)	90, 104, 527, 548
Tru9I	TTAA	4 cut(s)	90, 104, 527, 548
TseFI	GTSAC	2 cut(s)	691, 815
TseI	GCWGC	1 cut(s)	1020
Tsp45I	GTSAC	2 cut(s)	691, 815
TspDTI	ATGAA	3 cut(s)	55, 287, 644
TspGWI	ACGGA	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	4 cut(s)	490, 511, 594, 1002
XmnI	GAANNNNTTC	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.