Rh7BG064500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018210
Physical Location & Seq
Forward (+)
4286085 .. 4287806
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG064500.1

Sequence Viewer

Length: 1182 bp
ATGGAGTACCTCATCCCGCAGGACCTAATAGATGAAATTTTTTTAAGACTCCCTGTGAAGTGTCTAATCCGATTTTCTTTCGTTTCAAAGCTATGGAAGGCTGTCATCCACAGCAAAGACTTCATTCGAAAGCATCGTCAACGCTTTAATCTCAACCACTTAAATGATTTTGCCCTCATTCGCCATCATGTTGAATCTGATGCTCATGATCACTTCTATTCAGTAACCTTTTCTGGTGATGATGATACCACGTTAGAAGAAGAACGATTGAAGCATCCATTATATTCCCTCGAAGAAAGTGATAGACTTGGGCTTCAATCTGGCATCGTTGCTCTTTGCAATGGATTGATTTTACTTCATGTTAGAAGTAAGAAATATGATCTTGGTCTCTTTTTATGGAACCCCATGATTTCAAAGCATAAAATTATACCCACCCCCTTCAAATGGGCACGAGGACAATACTCGAATCGGATGTACGGATTGGGCTATCATTCTGCTGAAGATGACTTGAAGGTGTTGGTTCTTACCGAAGATTATGATAATAGGTCGAATTCTCTTTTTGGACAAATAAAGTTGACGATGGATTTAAAAGTCTACAGCGTAGCATTAAACAGATGGAAAAGGATAGAAAAGCTTCCACCCAGTAATCTTCGAATTTATGTAAATCATCAATCGAATATGGTGTCAATGAACGATTCTCGTGTAGCTTGGCTGATGAGAGACAATGGTCAATTAGATCTGTACATGGTTGTGACTTTTGATCTTGTGAAGGAGGAGTATCAGTTTTTTCGTGTTCCGATTCTTATTCGGGGTCCGGGAGTAGTAAAACTGATGGCATTCGGAGGCTTCTTATGCTTTTTGCGCTGTTATACAGGTGACTGTATAAATGTTTGGTTTACAAAAGACTGCGATTCTTGCTGGTCGTTGGAGCCTGTTGTGTTGAATTGCAAGCCTTTATTCTTTGATGGTGAGAGGTTTCTCTTGAACCAGTTGAACCATGATGGCAATGATAAACTGACTTGGTACAATATAAAGACACAAAAACATGATTATGGGACAGAAATTCGTCGGCATACTCGCAGCAATCGGTGTACAGAAACAACTCTATGTGTGGGAGACCTCAGTCTTCTACTTGATGCTGATCCTGATGGTCGTCGTAGCTACTTTGGCCATGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

393

Amino Acids

46.11

Weight (kDa)

7.99

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 9.6e-09 F-box domain
FBA_3 PF08268 105 - 315 1.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018210)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184151 RchiOBHm_Chr7g0188081
rosa_laevigata RLG00000004728
rosa_multiflora Rmu_co8443907.1_g000001
rosa_rugosa Rorug06G0463300 Rorug06G0488200
rosa_samantha Rh7BG064500 Rh7CG093300 Rh7DG064800 Rh7DG094300
rosa_wichuraiana Rw0G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 594
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 1136
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 4 cut(s) 36, 550, 654, 1062
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 5 cut(s) 8, 476, 743, 1025, 1093
AfiI CCNNNNNNNGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 91, 634, 707, 1161
AluI AGCT 4 cut(s) 91, 634, 707, 1161
Alw26I GTCTC 3 cut(s) 392, 714, 1110
AlwI GGATC 1 cut(s) 1136
AoxI GGCC 1 cut(s) 1168
ApeKI GCWGC 1 cut(s) 1080
ApoI RAATTY 4 cut(s) 36, 550, 654, 1062
ArsI GACNNNNNNTTYG 4 cut(s) 121, 153, 668, 700
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 864
AspS9I GGNCC 2 cut(s) 22, 812
AsuC2I CCSGG 1 cut(s) 816
AsuHPI GGTGA 3 cut(s) 248, 887, 980
AsuII TTCGAA 2 cut(s) 127, 652
AvaII GGWCC 2 cut(s) 22, 812
BaeGI GKGCMC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 1170
BauI CACGAG 2 cut(s) 450, 699
BbsI GAAGAC 1 cut(s) 1118
BbvI GCAGC 1 cut(s) 1092
BccI CCATC 7 cut(s) 192, 574, 609, 826, 959, 995, 1142
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 816
BcoDI GTCTC 3 cut(s) 392, 714, 1110
BfmI CTRYAG 1 cut(s) 595
BglII AGATCT 1 cut(s) 736
BisI GCNGC 1 cut(s) 1081
BlsI GCNGC 1 cut(s) 1082
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 2 cut(s) 22, 812
BmgT120I GGNCC 2 cut(s) 22, 812
BmiI GGNNCC 3 cut(s) 401, 813, 930
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 5 cut(s) 142, 190, 283, 333, 1126
BmuI ACTGGG 1 cut(s) 636
BoxI GACNNNNGTC 2 cut(s) 726, 1122
BpiI GAAGAC 1 cut(s) 1118
Bpu14I TTCGAA 2 cut(s) 127, 652
BpuMI CCSGG 1 cut(s) 816
BsaBI GATNNNNATC 1 cut(s) 1140
BsaI GGTCTC 2 cut(s) 392, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 2 cut(s) 642, 988
Bse3DI GCAATG 2 cut(s) 346, 1012
Bse8I GATNNNNATC 1 cut(s) 1140
BseGI GGATG 4 cut(s) 12, 105, 274, 477
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 2 cut(s) 346, 1012
BseMII CTCAG 1 cut(s) 1135
BseNI ACTGG 2 cut(s) 642, 988
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 1092
BshFI GGCC 1 cut(s) 1170
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 1 cut(s) 1069
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 3 cut(s) 392, 714, 1110
BsmFI GGGAC 1 cut(s) 1069
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 1 cut(s) 1170
Bso31I GGTCTC 2 cut(s) 392, 1110
Bsp119I TTCGAA 2 cut(s) 127, 652
Bsp1286I GDGCHC 1 cut(s) 451
Bsp1407I TGTACA 2 cut(s) 741, 1091
Bsp143I GATC 5 cut(s) 208, 379, 736, 760, 1141
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 1170
BspCNI CTCAG 1 cut(s) 1134
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 401, 813, 930
BspPI GGATC 1 cut(s) 1136
BspT104I TTCGAA 2 cut(s) 127, 652
BspTNI GGTCTC 2 cut(s) 392, 1110
BsrDI GCAATG 2 cut(s) 346, 1012
BsrGI TGTACA 2 cut(s) 741, 1091
BsrI ACTGG 2 cut(s) 642, 988
BssMI GATC 5 cut(s) 208, 379, 736, 760, 1141
BssSI CACGAG 2 cut(s) 450, 699
Bst2BI CACGAG 2 cut(s) 450, 699
Bst4CI ACNGT 1 cut(s) 881
BstAUI TGTACA 2 cut(s) 741, 1091
BstBI TTCGAA 2 cut(s) 127, 652
BstC8I GCNNGC 1 cut(s) 950
BstDEI CTNAG 1 cut(s) 1121
BstF5I GGATG 4 cut(s) 12, 105, 274, 477
BstHHI GCGC 1 cut(s) 864
BstKTI GATC 5 cut(s) 211, 382, 739, 763, 1144
BstMAI GTCTC 3 cut(s) 392, 714, 1110
BstMBI GATC 5 cut(s) 208, 379, 736, 760, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 852, 861, 915, 1167
BstPAI GACNNNNGTC 2 cut(s) 726, 1122
BstSCI CCNGG 1 cut(s) 814
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 1092
BstV2I GAAGAC 1 cut(s) 1118
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 1 cut(s) 1170
BtsCI GGATG 4 cut(s) 12, 105, 274, 477
Cac8I GCNNGC 1 cut(s) 950
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 864
Cfr13I GGNCC 2 cut(s) 22, 812
Csp6I GTAC 5 cut(s) 7, 475, 742, 1024, 1092
CviAII CATG 8 cut(s) 188, 206, 359, 406, 745, 998, 1046, 1172
CviQI GTAC 5 cut(s) 7, 475, 742, 1024, 1092
DdeI CTNAG 1 cut(s) 1121
DpnI GATC 5 cut(s) 210, 381, 738, 762, 1143
DpnII GATC 5 cut(s) 208, 379, 736, 760, 1141
DraI TTTAAA 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 1168
Eco31I GGTCTC 2 cut(s) 392, 1110
Eco47I GGWCC 2 cut(s) 22, 812
Eco57I CTGAAG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 550
FaeI CATG 8 cut(s) 191, 209, 362, 409, 748, 1001, 1049, 1175
FaqI GGGAC 1 cut(s) 1069
FatI CATG 8 cut(s) 187, 205, 358, 405, 744, 997, 1045, 1171
FauI CCCGC 1 cut(s) 24
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 1081
FokI GGATG 3 cut(s) 92, 261, 484
Fsp4HI GCNGC 1 cut(s) 1081
GlaI GCGC 1 cut(s) 863
GluI GCNGC 1 cut(s) 1081
HaeIII GGCC 1 cut(s) 1170
HapII CCGG 1 cut(s) 815
HhaI GCGC 1 cut(s) 864
Hin1II CATG 8 cut(s) 191, 209, 362, 409, 748, 1001, 1049, 1175
Hin6I GCGC 1 cut(s) 862
HinP1I GCGC 1 cut(s) 862
HincII GTYRAC 2 cut(s) 140, 576
HindII GTYRAC 2 cut(s) 140, 576
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 6 cut(s) 48, 194, 466, 695, 799, 911
HpaII CCGG 1 cut(s) 815
HphI GGTGA 3 cut(s) 248, 887, 980
Hpy166II GTNNAC 5 cut(s) 140, 576, 595, 897, 1092
Hpy188I TCNGA 5 cut(s) 71, 199, 471, 798, 842
Hpy188III TCNNGA 3 cut(s) 206, 982, 1145
Hpy8I GTNNAC 5 cut(s) 140, 576, 595, 897, 1092
Hpy99I CGWCG 2 cut(s) 1071, 1158
HpyAV CCTTC 4 cut(s) 91, 448, 505, 763
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 339, 948
HpyF10VI GCNNNNNNNGC 4 cut(s) 852, 861, 915, 1167
HpyF3I CTNAG 1 cut(s) 1121
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 8 cut(s) 191, 209, 362, 409, 748, 1001, 1049, 1175
HspAI GCGC 1 cut(s) 862
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 208, 379, 736, 760, 1141
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 1 cut(s) 1092
LweI GCATC 5 cut(s) 142, 190, 283, 333, 1126
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 3 cut(s) 223, 751, 875
MalI GATC 5 cut(s) 210, 381, 738, 762, 1143
MboI GATC 5 cut(s) 208, 379, 736, 760, 1141
MboII GAAGA 7 cut(s) 269, 272, 305, 512, 542, 641, 1118
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 1170
MluCI AATT 7 cut(s) 36, 423, 550, 654, 731, 943, 1062
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 906
MnlI CCTC 8 cut(s) 20, 185, 299, 446, 766, 836, 966, 1130
Mox20I TGGCCA 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 5 cut(s) 44, 147, 161, 587, 608
MslI CAYNNNNRTG 3 cut(s) 162, 749, 1050
Msp20I TGGCCA 1 cut(s) 1170
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 836
MwoI GCNNNNNNNGC 4 cut(s) 852, 861, 915, 1167
NciI CCSGG 1 cut(s) 816
NdeII GATC 5 cut(s) 208, 379, 736, 760, 1141
NlaIII CATG 8 cut(s) 191, 209, 362, 409, 748, 1001, 1049, 1175
NlaIV GGNNCC 3 cut(s) 401, 813, 930
NmuCI GTSAC 2 cut(s) 751, 875
NspV TTCGAA 2 cut(s) 127, 652
PagI TCATGA 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 836
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 5 cut(s) 194, 466, 695, 799, 911
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 1 cut(s) 1082
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 22
PshAI GACNNNNGTC 2 cut(s) 726, 1122
Psp5II RGGWCCY 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 401, 813, 930
PspPI GGNCC 2 cut(s) 22, 812
PspPPI RGGWCCY 1 cut(s) 22
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 5 cut(s) 8, 476, 743, 1025, 1093
RsaNI GTAC 5 cut(s) 7, 475, 742, 1024, 1092
RseI CAYNNNNRTG 3 cut(s) 162, 749, 1050
SaqAI TTAA 5 cut(s) 44, 147, 161, 587, 608
SatI GCNGC 1 cut(s) 1081
Sau3AI GATC 5 cut(s) 208, 379, 736, 760, 1141
Sau96I GGNCC 2 cut(s) 22, 812
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 5 cut(s) 142, 190, 283, 333, 1126
SfcI CTRYAG 1 cut(s) 595
SfuI TTCGAA 2 cut(s) 127, 652
SinI GGWCC 2 cut(s) 22, 812
SmiMI CAYNNNNRTG 3 cut(s) 162, 749, 1050
Sse9I AATT 7 cut(s) 36, 423, 550, 654, 731, 943, 1062
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 814
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 254
TaqI TCGA 6 cut(s) 127, 291, 464, 548, 652, 674
TasI AATT 7 cut(s) 36, 423, 550, 654, 731, 943, 1062
TatI WGTACW 2 cut(s) 741, 1091
TfiI GAWTC 5 cut(s) 194, 466, 695, 799, 911
Tru1I TTAA 5 cut(s) 44, 147, 161, 587, 608
Tru9I TTAA 5 cut(s) 44, 147, 161, 587, 608
TseFI GTSAC 2 cut(s) 751, 875
TseI GCWGC 1 cut(s) 1080
Tsp45I GTSAC 2 cut(s) 751, 875
TspDTI ATGAA 4 cut(s) 48, 112, 347, 704
TspGWI ACGGA 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 22, 812
XapI RAATTY 4 cut(s) 36, 550, 654, 1062
XmiI GTMKAC 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.