Rorug06G0463300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018210
Physical Location & Seq
Forward (+)
58871036 .. 58875483
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0463300.1

Sequence Viewer

Length: 1449 bp
ATGGCGGTTTCCGGTGATCTGAAGATGAAGATCGTCAAAGGCGACGCCGGTTACGTCCTCGAAGATGTGCCTCATCTCGCCGATTACTTGTCCGATCTTCCTACTTATCCCAATCCACTGCAAATCAATCCTGCTTACTCTGTAGTCAAGCAATATTTTGTTAACCAAGATGACACTGTTGCTCAAAAGATTGTTGTGCACAAGGATAGTCCAAGAGGGACACACCTTCGGCGAGCAGGACCACGCCAAAAGGTGTATTTTGAGGCGGATGAAGTGCATGCCTGTGTTGTGACTTGTGGTGGTTTGTGCCCTGGGCTCAACACGGTGATCAGGGAAATTGTCTGTGGACTTTATCACATGTATGGTGTCACCAGGGTTCTTGGAATAGATGGAGGATATAGTGGTTTCTATTCCCGAAATACTATTGAGTTGACACCTAGGGTTGTGAATGACATCCACAAACGTGGTGGTACTATCCTTGGGACATCACGAGGAGGCTATGATACCTCGAAGATAGTTGACAGCATTCATGATCGTGGAATTAACCATGTTTACATAATTGGAGGTGATGGAACTCAAAAAGGAGCATCTGTGATATTTGAGGAAGTTAGACGCCGTGGCCTCAAAGTTTCTGTTGTAGGAGTTCCTAAAACAATAGACAATGACATACCGGTTATAGATAGATCCTTTGGCTTTGATACTGCGGTTGAGGAGGCCCAGCGTGCCATATGTGCAGCTCATGTGGAATCTGAAAGTATTGAGCATGGTATTGGTCTTGTGAAGCTAATGGGACGCTACAGCGGTTTCATAGCTATGTATGCTACACTTGCCAGTCGAGATGTGGACTGTTGTTTGATTCCAGAGTCCCCCTTCTTTCTTGAAGGACGAGGTGGACTTTTTGAGTTCATTGAAAGACGACTCAAAGAAAATGGACATATGGTTATTGTGATGGCTGAGGGAGCAGGACAGGGTCTTCTTTCAGAGAGCTTGCAATCCATGAACCAGCAAGATGCTTCAGGAAACAAGCTACTTCAAGATGTTGGGTTATGGATATCTCAGAGGATCAAGGATCACTTTGCAAGACAACAAAAGATGTCTATTAATCTGAAATATATAGATCCTACATACATGATCAGGGCTATTCCAAGTAATGCAGCTGACAATGTCTACTGCACACTGCTGGCTCAAAGTGCCGTTCATGGAGCAATGGCAGGGTTCACGGGCTTTGTAGTTGGGCCTGTCAATGGAAGACATTCTTACATTCCTTTTAATCGTATTACTGAGAGCCAGAACAAGGTTGTGATTACCGATAGGATGTGGGCACGACTCCTTTCTTCAACCAACCAGCCGAGCTTCTTGAACCCCAAAGACATTGATGAAGTCCAAAAAGAGGAAGAGCCTCCAACTCAACTGCTAGAAGGGGAAAATTGTAAAGATAGCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

482

Amino Acids

53.17

Weight (kDa)

6.29

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PFK PF00365 95 - 400 2.7e-61 Phosphofructokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018210)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184151 RchiOBHm_Chr7g0188081
rosa_laevigata RLG00000004728
rosa_multiflora Rmu_co8443907.1_g000001
rosa_rugosa Rorug06G0463300 Rorug06G0488200
rosa_samantha Rh7BG064500 Rh7CG093300 Rh7DG064800 Rh7DG094300
rosa_wichuraiana Rw0G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1167
AciI CCGC 4 cut(s) 5, 266, 704, 801
AclWI GGATC 4 cut(s) 678, 1070, 1077, 1112
AcuI CTGAAG 2 cut(s) 41, 999
AcyI GRCGYC 2 cut(s) 45, 613
AfaI GTAC 2 cut(s) 472, 1445
AfiI CCNNNNNNNGG 3 cut(s) 1244, 1294, 1390
AflIII ACRYGT 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 670
AgsI TTSAA 5 cut(s) 881, 911, 1034, 1338, 1360
AjnI CCWGG 2 cut(s) 310, 371
AleI CACNNNNGTG 1 cut(s) 462
AluBI AGCT 7 cut(s) 737, 784, 812, 987, 1027, 1157, 1353
AluI AGCT 7 cut(s) 737, 784, 812, 987, 1027, 1157, 1353
Alw21I GWGCWC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 4 cut(s) 678, 1070, 1077, 1112
AoxI GGCC 3 cut(s) 619, 714, 1235
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 734, 1154
AseI ATTAAT 1 cut(s) 1101
AsiGI ACCGGT 1 cut(s) 670
Asp700I GAANNNNTTC 1 cut(s) 1252
AspA2I CCTAGG 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 239, 715, 1235
AsuHPI GGTGA 4 cut(s) 26, 337, 361, 578
AvaII GGWCC 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 437
BaeGI GKGCMC 3 cut(s) 201, 311, 1324
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BanII GRGCYC 1 cut(s) 318
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 965, 1255
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 746, 1166
BccI CCATC 3 cut(s) 383, 563, 943
BceAI ACGGC 2 cut(s) 600, 1178
BciT130I CCWGG 2 cut(s) 312, 373
BclI TGATCA 2 cut(s) 327, 1131
BfaI CTAG 2 cut(s) 438, 1415
BfmI CTRYAG 2 cut(s) 141, 796
BisI GCNGC 2 cut(s) 735, 1155
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 2 cut(s) 736, 1156
BmcAI AGTACT 1 cut(s) 1445
Bme1390I CCNGG 2 cut(s) 312, 373
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 239, 715, 1235
BmrFI CCNGG 2 cut(s) 312, 373
BmsI GCATC 2 cut(s) 596, 1000
BpiI GAAGAC 2 cut(s) 965, 1255
Bpu10I CCTNAGC 1 cut(s) 954
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 45, 613
BsaJI CCNNGG 6 cut(s) 310, 311, 372, 437, 478, 616
BsaWI WCCGGW 2 cut(s) 11, 670
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 1244, 1294, 1390
Bse118I RCCGGY 2 cut(s) 47, 670
Bse1I ACTGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 1212
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 2 cut(s) 312, 373
BseDI CCNNGG 6 cut(s) 310, 311, 372, 437, 478, 616
BseGI GGATG 3 cut(s) 274, 453, 1320
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 1244, 1294, 1390
BseMI GCAATG 1 cut(s) 1212
BseMII CTCAG 3 cut(s) 945, 1070, 1272
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 2 cut(s) 507, 725
BseSI GKGCMC 3 cut(s) 201, 311, 1324
BseXI GCAGC 2 cut(s) 746, 1166
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 2 cut(s) 753, 1156
BshFI GGCC 3 cut(s) 621, 716, 1237
BshTI ACCGGT 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 3 cut(s) 12, 48, 671
BslFI GGGAC 4 cut(s) 232, 496, 804, 850
BslI CCNNNNNNNGG 3 cut(s) 1244, 1294, 1390
BsmFI GGGAC 4 cut(s) 232, 496, 804, 850
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 3 cut(s) 621, 716, 1237
Bsp1286I GDGCHC 4 cut(s) 201, 311, 318, 1324
BspACI CCGC 4 cut(s) 5, 266, 704, 801
BspANI GGCC 3 cut(s) 621, 716, 1237
BspCNI CTCAG 3 cut(s) 946, 1069, 1273
BspHI TCATGA 1 cut(s) 529
BspPI GGATC 4 cut(s) 678, 1070, 1077, 1112
BspQI GCTCTTC 1 cut(s) 1389
BsrDI GCAATG 1 cut(s) 1212
BsrFI RCCGGY 2 cut(s) 47, 670
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 2 cut(s) 47, 670
BssECI CCNNGG 6 cut(s) 310, 311, 372, 437, 478, 616
BssNI GRCGYC 2 cut(s) 45, 613
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 437, 478
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 312, 373
Bst4CI ACNGT 3 cut(s) 178, 325, 848
Bst6I CTCTTC 1 cut(s) 1389
BstACI GRCGYC 2 cut(s) 45, 613
BstC8I GCNNGC 5 cut(s) 234, 279, 723, 989, 1182
BstDEI CTNAG 3 cut(s) 954, 1056, 1281
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 3 cut(s) 274, 453, 1320
BstMWI GCNNNNNNNGC 6 cut(s) 722, 731, 818, 827, 959, 1190
BstNI CCWGG 2 cut(s) 312, 373
BstNSI RCATGY 2 cut(s) 281, 361
BstSCI CCNGG 2 cut(s) 310, 371
BstSFI CTRYAG 2 cut(s) 141, 796
BstSLI GKGCMC 3 cut(s) 201, 311, 1324
BstV1I GCAGC 2 cut(s) 746, 1166
BstV2I GAAGAC 2 cut(s) 965, 1255
BstX2I RGATCY 2 cut(s) 683, 1117
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 2 cut(s) 683, 1117
BsuRI GGCC 3 cut(s) 621, 716, 1237
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 3 cut(s) 274, 453, 1320
BtsI GCAGTG 2 cut(s) 116, 1175
BtsIMutI CAGTG 3 cut(s) 116, 174, 1175
Cac8I GCNNGC 5 cut(s) 234, 279, 723, 989, 1182
CciI TCATGA 1 cut(s) 529
Cfr10I RCCGGY 2 cut(s) 47, 670
Cfr13I GGNCC 3 cut(s) 239, 715, 1235
CseI GACGC 3 cut(s) 53, 621, 801
Csp6I GTAC 2 cut(s) 471, 1444
CspAI ACCGGT 1 cut(s) 670
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 9 cut(s) 278, 358, 530, 548, 740, 764, 997, 1129, 1199
CviQI GTAC 2 cut(s) 471, 1444
DdeI CTNAG 3 cut(s) 954, 1056, 1281
Eam1104I CTCTTC 1 cut(s) 1389
EarI CTCTTC 1 cut(s) 1389
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 437, 478
Eco24I GRGCYC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 1053
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 41, 999
EcoRII CCWGG 2 cut(s) 310, 371
EcoRV GATATC 1 cut(s) 1053
EcoT14I CCWWGG 2 cut(s) 437, 478
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 437, 478
FaeI CATG 9 cut(s) 281, 361, 533, 551, 743, 767, 1000, 1132, 1202
FalI AAGNNNNNCTT 4 cut(s) 1058, 1090, 1240, 1272
FaqI GGGAC 4 cut(s) 232, 496, 804, 850
FatI CATG 9 cut(s) 277, 357, 529, 547, 739, 763, 996, 1128, 1198
FauNDI CATATG 2 cut(s) 728, 936
FbaI TGATCA 2 cut(s) 327, 1131
FblI GTMKAC 1 cut(s) 1167
Fnu4HI GCNGC 2 cut(s) 735, 1155
FokI GGATG 3 cut(s) 281, 440, 1327
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 735, 1155
FspBI CTAG 2 cut(s) 438, 1415
GluI GCNGC 2 cut(s) 735, 1155
GsaI CCCAGC 1 cut(s) 721
HaeIII GGCC 3 cut(s) 621, 716, 1237
HapII CCGG 3 cut(s) 12, 48, 671
HgaI GACGC 3 cut(s) 53, 621, 801
Hin1I GRCGYC 2 cut(s) 45, 613
Hin1II CATG 9 cut(s) 281, 361, 533, 551, 743, 767, 1000, 1132, 1202
HincII GTYRAC 3 cut(s) 163, 432, 520
HindII GTYRAC 3 cut(s) 163, 432, 520
HinfI GANTC 5 cut(s) 746, 856, 863, 918, 1326
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 3 cut(s) 12, 48, 671
HphI GGTGA 4 cut(s) 26, 337, 361, 578
Hpy188I TCNGA 6 cut(s) 21, 94, 751, 982, 1059, 1107
Hpy188III TCNNGA 9 cut(s) 414, 489, 530, 836, 860, 878, 1017, 1034, 1357
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 236, 875, 880, 1412
HpyCH4III ACNGT 3 cut(s) 178, 325, 848
HpyCH4IV ACGT 2 cut(s) 54, 463
HpyCH4V TGCA 8 cut(s) 121, 199, 277, 734, 991, 1079, 1154, 1173
HpyF10VI GCNNNNNNNGC 6 cut(s) 722, 731, 818, 827, 959, 1190
HpyF3I CTNAG 3 cut(s) 954, 1056, 1281
HpySE526I ACGT 2 cut(s) 54, 463
Hsp92I GRCGYC 2 cut(s) 45, 613
Hsp92II CATG 9 cut(s) 281, 361, 533, 551, 743, 767, 1000, 1132, 1202
Ksp22I TGATCA 2 cut(s) 327, 1131
KspAI GTTAAC 1 cut(s) 163
LguI GCTCTTC 1 cut(s) 1389
LmnI GCTCC 3 cut(s) 584, 959, 1202
Lsp1109I GCAGC 2 cut(s) 746, 1166
LweI GCATC 2 cut(s) 596, 1000
MaeI CTAG 2 cut(s) 438, 1415
MaeII ACGT 2 cut(s) 54, 463
MaeIII GTNAC 3 cut(s) 50, 289, 367
MboII GAAGA 9 cut(s) 34, 40, 74, 89, 523, 965, 1260, 1326, 1406
MflI RGATCY 2 cut(s) 683, 1117
MhlI GDGCHC 4 cut(s) 201, 311, 318, 1324
MluCI AATT 4 cut(s) 336, 540, 558, 1426
MlyI GAGTC 3 cut(s) 872, 912, 1320
MmeI TCCRAC 1 cut(s) 1427
MroXI GAANNNNTTC 1 cut(s) 1252
MseI TTAA 4 cut(s) 162, 543, 1101, 1269
MslI CAYNNNNRTG 5 cut(s) 282, 360, 462, 534, 812
MspA1I CMGCKG 2 cut(s) 801, 1157
MspI CCGG 3 cut(s) 12, 48, 671
MspR9I CCNGG 2 cut(s) 312, 373
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 2 cut(s) 312, 373
MwoI GCNNNNNNNGC 6 cut(s) 722, 731, 818, 827, 959, 1190
NdeI CATATG 2 cut(s) 728, 936
NlaIII CATG 9 cut(s) 281, 361, 533, 551, 743, 767, 1000, 1132, 1202
NmeAIII GCCGAG 1 cut(s) 1374
NmuCI GTSAC 2 cut(s) 289, 367
NspI RCATGY 2 cut(s) 281, 361
OliI CACNNNNGTG 1 cut(s) 462
PaeI GCATGC 1 cut(s) 281
PagI TCATGA 1 cut(s) 529
PasI CCCWGGG 1 cut(s) 311
PciI ACATGT 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 1389
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 51
PctI GAATGC 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 1252
PfeI GAWTC 2 cut(s) 746, 856
PflFI GACNNNGTC 2 cut(s) 969, 1163
PinAI ACCGGT 1 cut(s) 670
PkrI GCNGC 2 cut(s) 736, 1156
PleI GAGTC 3 cut(s) 871, 912, 1320
PpsI GAGTC 3 cut(s) 871, 912, 1320
PscI ACATGT 1 cut(s) 357
PshBI ATTAAT 1 cut(s) 1101
Psp6I CCWGG 2 cut(s) 310, 371
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 2 cut(s) 310, 371
PspPI GGNCC 3 cut(s) 239, 715, 1235
PsuI RGATCY 2 cut(s) 683, 1117
PsyI GACNNNGTC 2 cut(s) 969, 1163
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 2 cut(s) 472, 1445
RsaNI GTAC 2 cut(s) 471, 1444
RseI CAYNNNNRTG 5 cut(s) 282, 360, 462, 534, 812
SapI GCTCTTC 1 cut(s) 1389
SaqAI TTAA 4 cut(s) 162, 543, 1101, 1269
SatI GCNGC 2 cut(s) 735, 1155
Sau96I GGNCC 3 cut(s) 239, 715, 1235
ScaI AGTACT 1 cut(s) 1445
SchI GAGTC 3 cut(s) 872, 912, 1320
ScrFI CCNGG 2 cut(s) 312, 373
SduI GDGCHC 4 cut(s) 201, 311, 318, 1324
SfaNI GCATC 2 cut(s) 596, 1000
SfcI CTRYAG 2 cut(s) 141, 796
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 5 cut(s) 282, 360, 462, 534, 812
SphI GCATGC 1 cut(s) 281
Sse9I AATT 4 cut(s) 336, 540, 558, 1426
SsiI CCGC 4 cut(s) 5, 266, 704, 801
SspI AATATT 1 cut(s) 155
SspMI CTAG 2 cut(s) 438, 1415
StyD4I CCNGG 2 cut(s) 310, 371
StyI CCWWGG 2 cut(s) 437, 478
TaaI ACNGT 3 cut(s) 178, 325, 848
TaiI ACGT 2 cut(s) 57, 466
TaqI TCGA 3 cut(s) 60, 509, 835
TasI AATT 4 cut(s) 336, 540, 558, 1426
TatI WGTACW 1 cut(s) 1443
TfiI GAWTC 2 cut(s) 746, 856
Tru1I TTAA 4 cut(s) 162, 543, 1101, 1269
Tru9I TTAA 4 cut(s) 162, 543, 1101, 1269
TscAI CASTG 3 cut(s) 123, 181, 1182
TseFI GTSAC 2 cut(s) 289, 367
TseI GCWGC 2 cut(s) 734, 1154
Tsp45I GTSAC 2 cut(s) 289, 367
TspDTI ATGAA 8 cut(s) 41, 285, 518, 796, 895, 1013, 1187, 1392
TspRI CASTG 3 cut(s) 123, 181, 1182
Tth111I GACNNNGTC 2 cut(s) 969, 1163
VneI GTGCAC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 239
VspI ATTAAT 1 cut(s) 1101
XceI RCATGY 2 cut(s) 281, 361
XcmI CCANNNNNNNNNTGG 2 cut(s) 464, 838
XmaJI CCTAGG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 1167
XmnI GAANNNNTTC 1 cut(s) 1252
XspI CTAG 2 cut(s) 438, 1415
ZrmI AGTACT 1 cut(s) 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.