Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017483

Physical Location & Seq

Genomic Coordinates Forward (+)

20110375 .. 20110739

Gene Structure 365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAGCTTCTTCATCCGCTTCATCATCCTGATATTGTTGAAATAAAGCACATTATGCTCCCTTCTTCACGACAAAAATTCGGAGATATCTATGTTGTGTTTGAGTTGATGGAATCATACCTTCACCAGGTTATTAAGGCAAATGATGGTCTTAACCCTGAGCGTTATCAGTTTTTCCTATACCAGCTTGTTCCAAATGTATTTCATCAAGATTTAAAGCCAAAAAATAGCCTTACTAATGCTGACTGCAAATTAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

87

Amino Acids

10.29

Weight (kDa)

7.92

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 87	4.2e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431451 RchiOBHm_Chr7g0193641 RchiOBHm_Chr7g0202521
rosa_laevigata	RLG00000031980
rosa_multiflora	Rmu_sc0005103.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050280 Rroxscaffold_2G00089050
rosa_samantha	Rh6AG281400 Rh6BG282100 Rh7AG137800 Rh7CG141700
rosa_wichuraiana	Rw5G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	7, 187
AluI	AGCT	2 cut(s)	7, 187
ApoI	RAATTY	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	116
BccI	CCATC	2 cut(s)	103, 140
BciT130I	CCWGG	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	13, 25
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	159
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	13, 25
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	13, 25
CsiI	ACCWGGT	1 cut(s)	126
CviJI	RGCY	4 cut(s)	7, 187, 220, 231
CviKI_1	RGCY	4 cut(s)	7, 187, 220, 231
DdeI	CTNAG	1 cut(s)	159
DraI	TTTAAA	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	88
FaiI	YATR	5 cut(s)	56, 93, 118, 181, 262
FokI	GGATG	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	29, 69, 209
HpyAV	CCTTC	2 cut(s)	72, 131
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	42, 113, 140, 171, 197
MabI	ACCWGGT	1 cut(s)	126
MboII	GAAGA	1 cut(s)	57
MluCI	AATT	2 cut(s)	77, 251
MseI	TTAA	4 cut(s)	135, 153, 215, 254
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	135, 153, 215, 254
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	4 cut(s)	9, 123, 132, 189
SexAI	ACCWGGT	1 cut(s)	126
SgeI	CNNG	8 cut(s)	41, 81, 139, 140, 170, 196, 200, 221
Sse9I	AATT	2 cut(s)	77, 251
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	126
TasI	AATT	2 cut(s)	77, 251
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	4 cut(s)	135, 153, 215, 254
Tru9I	TTAA	4 cut(s)	135, 153, 215, 254
TspDTI	ATGAA	3 cut(s)	11, 17, 194
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.