Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017483

Physical Location & Seq

Genomic Coordinates Forward (+)

10938232 .. 10941977

Gene Structure 3746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGAAGATTAATGGTGTCTTTGAGCATGCCTTAGATGATACAAGGATCCCGAGAGAAATGAAGCTTCTTCATCTGCTTCATCATCCCGATATTGTTGAAATAAAGCACATTATGCTCCCTTCTTCACGACAAAAATTCGGAGATATCTATGTTGTGTTTGAGTTTATGGAATCATACCTTCACCAGGTTATCAAGGCAAATGATGGTTTTACCCCGAGCATTATCAGCTTTTCCTATACTCTACGACCAACGTCGTTGAGGTTGGTGGTAGTGAACTTCTCCCTTGGATCGTCGTCTGCTAAGAAGCGGGCGATACCCGCTCCGATACCAAATGATGCGGGAAGCGTGAACACGATAGTAAGAGGCTTCGTCAAGCGTCGAAAGCCATATGAGATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

15.28

Weight (kDa)

9.87

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431451 RchiOBHm_Chr7g0193641 RchiOBHm_Chr7g0202521
rosa_laevigata	RLG00000031980
rosa_multiflora	Rmu_sc0005103.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050280 Rroxscaffold_2G00089050
rosa_samantha	Rh6AG281400 Rh6BG282100 Rh7AG137800 Rh7CG141700
rosa_wichuraiana	Rw5G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AciI	CCGC	3 cut(s)	310, 321, 341
AclWI	GGATC	3 cut(s)	43, 56, 298
AcsI	RAATTY	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	67, 231, 402
AluI	AGCT	3 cut(s)	67, 231, 402
AlwI	GGATC	3 cut(s)	43, 56, 298
Ama87I	CYCGRG	2 cut(s)	52, 217
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	2 cut(s)	52, 217
BamHI	GGATCC	1 cut(s)	48
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	188
BfaI	CTAG	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	2 cut(s)	52, 217
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	52, 217
BslI	CCNNNNNNNGG	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	52, 217
Bsp143I	GATC	2 cut(s)	48, 290
BspACI	CCGC	3 cut(s)	310, 321, 341
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	3 cut(s)	43, 56, 298
BsrBI	CCGCTC	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	48, 290
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	30, 312
BstDEI	CTNAG	2 cut(s)	34, 303
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	51, 293
BstMBI	GATC	2 cut(s)	48, 290
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 228, 320, 385
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	30, 312
CseI	GACGC	1 cut(s)	368
CsiI	ACCWGGT	1 cut(s)	186
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	67, 231, 369, 388, 402
CviKI_1	RGCY	5 cut(s)	67, 231, 369, 388, 402
DdeI	CTNAG	2 cut(s)	34, 303
DpnI	GATC	2 cut(s)	50, 292
DpnII	GATC	2 cut(s)	48, 290
Eco130I	CCWWGG	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	52, 217
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	32
FaiI	YATR	8 cut(s)	30, 116, 153, 170, 178, 240, 391, 393
FatI	CATG	1 cut(s)	28
FauI	CCCGC	3 cut(s)	303, 328, 334
FauNDI	CATATG	1 cut(s)	391
FokI	GGATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	277, 352
Hpy188I	TCNGA	2 cut(s)	143, 327
Hpy188III	TCNNGA	3 cut(s)	52, 89, 129
Hpy8I	GTNNAC	2 cut(s)	277, 352
Hpy99I	CGWCG	3 cut(s)	259, 298, 384
HpyAV	CCTTC	2 cut(s)	132, 191
HpyCH4IV	ACGT	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 228, 320, 385
HpyF3I	CTNAG	2 cut(s)	34, 303
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	48, 290
LmnI	GCTCC	2 cut(s)	123, 328
LpnPI	CCDG	2 cut(s)	173, 200
LweI	GCATC	1 cut(s)	328
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	1 cut(s)	403
MaeII	ACGT	1 cut(s)	254
MalI	GATC	2 cut(s)	50, 292
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	2 cut(s)	48, 290
MboII	GAAGA	4 cut(s)	16, 19, 62, 117
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	1 cut(s)	137
MnlI	CCTC	2 cut(s)	255, 359
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	115, 228, 320, 385
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	2 cut(s)	48, 290
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	173
PshAI	GACNNNNGTC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	48, 290
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	7 cut(s)	69, 183, 192, 233, 257, 266, 404
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	328
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	310, 321, 341
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	382
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TspDTI	ATGAA	4 cut(s)	17, 62, 71, 77
VspI	ATTAAT	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.