Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005103.1

Orthogroup ID

OG0017483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9767 .. 11091

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005103.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgattattcgtcggaattgtggcatcgcatctgcagaaccaccataccatccgaccgccgttgaagccagtggccggacaacgccacctttgacccacgtcaccgccgaaccacatagactaccaagccggatagtgagacctcccccaacaaacgttctcctctcgggccatacacgtctcctgacctttgccggcggactgaaacactctacctacctgtctgacaacagcgccttgaagacatgccgccggatgaaacatcggaacacagacagttcgactgtacgagaaaatgaaactagcaatctagagtcagaattcttcacaaaatatggaaaggcaagcaggtacaaagttcaaaaggtcattgggaaaggaagttatggtgttgtgggttctgcggttgacacccacattggagaaaaagttgcgatcaagaagattaatggtgtctttaagcatgtctcatatgctacaaggatcctgagggaaattaagattcttcatctgcttcatcatcttgatattgttgaaataaagcacattatgctcccttcttcacgacaaaaattcagagatatctatgttgtgttcgagttgatggaatcgtaccttcaccactttatcaaggaaaatgatggtcttacccttgagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

220

Amino Acids

24.9

Weight (kDa)

9.79

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431451 RchiOBHm_Chr7g0193641 RchiOBHm_Chr7g0202521
rosa_laevigata	RLG00000031980
rosa_multiflora	Rmu_sc0005103.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050280 Rroxscaffold_2G00089050
rosa_samantha	Rh6AG281400 Rh6BG282100 Rh7AG137800 Rh7CG141700
rosa_wichuraiana	Rw5G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AciI	CCGC	5 cut(s)	57, 105, 198, 250, 404
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	478, 491
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	2 cut(s)	320, 572
AfaI	GTAC	3 cut(s)	288, 353, 614
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	65, 241, 362, 536
AjiI	CACGTC	2 cut(s)	100, 179
Alw26I	GTCTC	3 cut(s)	133, 185, 472
AlwI	GGATC	2 cut(s)	478, 491
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	73, 169
ApoI	RAATTY	2 cut(s)	320, 572
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	94, 611
AvaI	CYCGRG	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	248
BccI	CCATC	3 cut(s)	57, 598, 635
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	3 cut(s)	133, 185, 472
BfaI	CTAG	2 cut(s)	303, 311
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	166
BmgBI	CACGTC	2 cut(s)	100, 179
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	485
BmsI	GCATC	2 cut(s)	33, 38
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	49, 261
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	75, 171
BsiEI	CGRYCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	76, 130, 195, 253
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	3 cut(s)	133, 185, 472
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	75, 171
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	435, 483
BspACI	CCGC	5 cut(s)	57, 105, 198, 250, 404
BspANI	GGCC	2 cut(s)	75, 171
BspCNI	CTCAG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	485
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	478, 491
BspTNI	GGTCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	2 cut(s)	435, 483
Bst4CI	ACNGT	2 cut(s)	278, 286
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	196, 346
BstDEI	CTNAG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	49, 261
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	438, 486
BstMAI	GTCTC	3 cut(s)	133, 185, 472
BstMBI	GATC	2 cut(s)	435, 483
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 550
BstNSI	RCATGY	2 cut(s)	249, 467
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	75, 171
BtgZI	GCGATG	1 cut(s)	10
BtrI	CACGTC	2 cut(s)	100, 179
BtsCI	GGATG	2 cut(s)	49, 261
BtsIMutI	CAGTG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	196, 346
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	287, 352, 613
CviAII	CATG	2 cut(s)	246, 464
CviJI	RGCY	4 cut(s)	68, 75, 129, 171
CviKI_1	RGCY	4 cut(s)	68, 75, 129, 171
CviQI	GTAC	3 cut(s)	287, 352, 613
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	437, 485
DpnII	GATC	2 cut(s)	435, 483
EaeI	YGGCCR	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	249, 467
FatI	CATG	2 cut(s)	245, 463
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	2 cut(s)	36, 268
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	2 cut(s)	303, 311
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	75, 171
HapII	CCGG	4 cut(s)	76, 130, 195, 253
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	249, 467
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	314, 502, 608
HpaII	CCGG	4 cut(s)	76, 130, 195, 253
HphI	GGTGA	2 cut(s)	94, 611
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	6 cut(s)	15, 54, 226, 267, 319, 578
Hpy188III	TCNNGA	6 cut(s)	184, 311, 439, 487, 524, 564
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	567, 626
HpyCH4III	ACNGT	2 cut(s)	278, 286
HpyCH4IV	ACGT	3 cut(s)	99, 156, 178
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 550
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	3 cut(s)	99, 156, 178
Hsp92II	CATG	2 cut(s)	249, 467
HspAI	GCGC	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	435, 483
LmnI	GCTCC	1 cut(s)	558
LpnPI	CCDG	9 cut(s)	82, 89, 143, 197, 208, 233, 266, 334, 500
LweI	GCATC	2 cut(s)	33, 38
MaeI	CTAG	2 cut(s)	303, 311
MaeII	ACGT	3 cut(s)	99, 156, 178
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	437, 485
MboI	GATC	2 cut(s)	435, 483
MboII	GAAGA	5 cut(s)	253, 316, 454, 497, 552
MflI	RGATCY	1 cut(s)	483
MluCI	AATT	4 cut(s)	16, 320, 495, 572
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	153, 173, 483
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	3 cut(s)	447, 459, 498
MspI	CCGG	4 cut(s)	76, 130, 195, 253
MwoI	GCNNNNNNNGC	2 cut(s)	65, 550
NaeI	GCCGGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	435, 483
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	249, 467
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	2 cut(s)	249, 467
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	502, 608
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshAI	GACNNNNGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	3 cut(s)	288, 353, 614
RsaNI	GTAC	3 cut(s)	287, 352, 613
SaqAI	TTAA	3 cut(s)	447, 459, 498
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	435, 483
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	33, 38
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	4 cut(s)	16, 320, 495, 572
SsiI	CCGC	5 cut(s)	57, 105, 198, 250, 404
SspMI	CTAG	2 cut(s)	303, 311
TaaI	ACNGT	2 cut(s)	278, 286
TaiI	ACGT	3 cut(s)	102, 159, 181
TaqI	TCGA	2 cut(s)	281, 597
TasI	AATT	4 cut(s)	16, 320, 495, 572
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	502, 608
Tru1I	TTAA	3 cut(s)	447, 459, 498
Tru9I	TTAA	3 cut(s)	447, 459, 498
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	272, 312, 497, 506
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	320, 572
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	2 cut(s)	249, 467
XspI	CTAG	2 cut(s)	303, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.