Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017483

Physical Location & Seq

Genomic Coordinates Reverse (-)

11014485 .. 11028391

Gene Structure 13907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG137800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAAGAGTCTGAAGGAACTAAACTAAAACATGAAAGCAATCTAGAGTCAGAATTCTTCACAGAATATGGAAAGGCAAGCAAGTACAATGTTCAGGAGGTCATTGGGAAAGGAAGTTATGGTGTTGTGGGTTCTGGGGTTGACACCCACACCGGAGAAAAAGTTGCGATCAAGAAGATTAATGGTTTTTTTGAGTATGTCTCAGATGCTACAAGGATCCTGAGAGAAATCAAGCTTCTTCATCTGCTTCATCATCCTGATATTGTTGAAATAAATCACATTATGCTTCCTTCTTCAGGACAAAAATTCAGAGATACGTATGTTGTGTTTGAGTTGATGGAATCGTACCTTCACCGGGTTATCAAGGCAAATTATGGTCTTACCCAGGAGCATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

6.44

Isoelectric Point (pI)

20.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 130	1.7e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 115	1.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431451 RchiOBHm_Chr7g0193641 RchiOBHm_Chr7g0202521
rosa_laevigata	RLG00000031980
rosa_multiflora	Rmu_sc0005103.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050280 Rroxscaffold_2G00089050
rosa_samantha	Rh6AG281400 Rh6BG282100 Rh7AG137800 Rh7CG141700
rosa_wichuraiana	Rw5G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	211, 224
AcsI	RAATTY	2 cut(s)	53, 305
AcuI	CTGAAG	2 cut(s)	33, 279
AfaI	GTAC	2 cut(s)	86, 347
AfiI	CCNNNNNNNGG	2 cut(s)	296, 355
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	211, 224
ApoI	RAATTY	2 cut(s)	53, 305
AseI	ATTAAT	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BamHI	GGATCC	1 cut(s)	216
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	356, 386
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	356, 386
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 355
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	296, 355
BseMII	CTCAG	2 cut(s)	212, 216
BsiSI	CCGG	2 cut(s)	153, 355
BslI	CCNNNNNNNGG	2 cut(s)	296, 355
BsmAI	GTCTC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	168, 216
BspCNI	CTCAG	2 cut(s)	213, 215
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	211, 224
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	168, 216
Bst2UI	CCWGG	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	202, 221
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	171, 219
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	168, 216
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	354, 384
BstSNI	TACGTA	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	85, 346
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	1 cut(s)	235
CviKI_1	RGCY	1 cut(s)	235
CviQI	GTAC	2 cut(s)	85, 346
DdeI	CTNAG	2 cut(s)	202, 221
DpnI	GATC	2 cut(s)	170, 218
DpnII	GATC	2 cut(s)	168, 216
Eco105I	TACGTA	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	33, 279
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	35
FaiI	YATR	7 cut(s)	33, 69, 120, 198, 284, 321, 375
FatI	CATG	1 cut(s)	31
FokI	GGATG	1 cut(s)	240
FspBI	CTAG	1 cut(s)	44
HapII	CCGG	2 cut(s)	153, 355
Hin1II	CATG	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	8, 47, 341
HpaII	CCGG	2 cut(s)	153, 355
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	13, 52, 205, 311
Hpy188III	TCNNGA	6 cut(s)	44, 95, 172, 220, 257, 297
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	3 cut(s)	8, 300, 359
HpyCH4IV	ACGT	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	202, 221
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	168, 216
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	8 cut(s)	80, 120, 166, 233, 270, 282, 368, 371
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	317
MalI	GATC	2 cut(s)	170, 218
MboI	GATC	2 cut(s)	168, 216
MboII	GAAGA	4 cut(s)	49, 187, 230, 285
MflI	RGATCY	1 cut(s)	216
MluCI	AATT	3 cut(s)	53, 305, 370
MlyI	GAGTC	2 cut(s)	17, 56
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	180
MspI	CCGG	2 cut(s)	153, 355
MspR9I	CCNGG	2 cut(s)	356, 386
MvaI	CCWGG	1 cut(s)	386
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	168, 216
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	341
PleI	GAGTC	2 cut(s)	16, 55
PpsI	GAGTC	2 cut(s)	16, 55
Ppu21I	YACGTR	1 cut(s)	318
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	86, 347
RsaNI	GTAC	2 cut(s)	85, 346
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	168, 216
SchI	GAGTC	2 cut(s)	17, 56
ScrFI	CCNGG	2 cut(s)	356, 386
SetI	ASST	4 cut(s)	102, 237, 320, 351
SfaNI	GCATC	1 cut(s)	196
SnaBI	TACGTA	1 cut(s)	318
Sse9I	AATT	3 cut(s)	53, 305, 370
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	354, 384
TaiI	ACGT	1 cut(s)	320
TasI	AATT	3 cut(s)	53, 305, 370
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	17, 48, 230, 239
VspI	ATTAAT	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	53, 305
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.