RchiOBHm_Chr7g0210311

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018716
Physical Location & Seq
Forward (+)
27946981 .. 27948215
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18818

Sequence Viewer

Length: 1122 bp
ATGAGAATACACAGCAAATTCCTCTCAAATTCAGTTTCTCTACAACATGCCAACCACGAACCAACAATCCATCAACGAAGAAATTACAAGCTGTGGTTTCGAATAGCAACCTATATATTCTTTGCCCTCTCCGGTCAATCAACAGCAACACTTCTGGGAAGATTCTACTTCGAGAAAGGTGGAAAGAGCAAATGGGTGGGGGCTCTGGTGCAACTCGCAGGATTTCCAATCCTCCTTCCTTTCTATTTCTTCGTATCCTCCAAAATTAGTCGCACTCCAAGTACTACTGTTGCTGCTGCTTGTCCTATCCAATATTCAAAACCCACGTCTTTGTTAACAACCCTAGCATTGGTTTATGTTACCCTAGGGCTACTCGTAGCAGGAATCTGCTTCTTGACTTCATTTGGGCTTCAATACCTTCCTGTCTCTACTTTCTCACTCATTTGTGCTTCTCAATTGGGATTCACAGCTCTCTTTTCCTTTTTCCTAAACTCCCAAAAGTTCACTCCATTTGTGATTAATTCCATTGTGCTACTCACCATTTCCTCCATTCTCCTTGTGTTCAATACCGACTCATCATCAGTATTAGTCTCTAAAGCTAAGTACAAAGTCGGATTCATATGCACCATTGGCGCTGCTGCTGGGAACGGATTAGCACTTGCCTTAACCCAGTTCGCCTTCACGAAAATAATCAAGAAGCAAACATTTAGAGCAGTGGTGGATTTGATAATCTATGAGTCACTAATAGCAACATGTGCTACTTTGGTCGGACTTTTTGCTAGTGGAGAGTGGAAGGGCTTAAATCTAGAGATGGATGAGTTTCAAACAGGAAAGGGATCTTATGTGTTGACTCTAGCTTGGACAATGATTTCTTGGCAAGTTTTTGCTATTGGTGCAGTGGGATTGATATTTGAGGTTTCTTCCCTCTTCTGCAATGTTATAATTGCTTTGGGTTTGCCCGTGGTTCAAGTTTTGGCTGTGATTGTTTTCCATGACAGGATGCATGGTTTGAAGATTGTGGCAATAGTTTTGGCCCTATGGGGTTTCATTTCATATGTCTATCAGCAGTATCTTGATGACCATTGCAAATCATTCGAAAGTACTGAAAATGAAAATGCATGA

Protein Analysis

373

Amino Acids

41.08

Weight (kDa)

9.24

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 35 - 360 7.1e-116 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18190
rosa_chinensis RchiOBHm_Chr7g0210311
rosa_laevigata RLG00000003050
rosa_multiflora Rmu_sc0004503.1_g000004
rosa_roxburghii Rroxscaffold_3G00248440
rosa_samantha Rh7AG253500 Rh7CG270400 Rh7DG261100
rosa_wichuraiana Rw7G021610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
AclWI GGATC 1 cut(s) 844
AcsI RAATTY 2 cut(s) 17, 28
AfaI GTAC 3 cut(s) 283, 605, 1102
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 752
AgsI TTSAA 6 cut(s) 318, 413, 565, 824, 968, 1012
AjiI CACGTC 1 cut(s) 327
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 4 cut(s) 91, 470, 599, 857
AluI AGCT 4 cut(s) 91, 470, 599, 857
Alw26I GTCTC 2 cut(s) 430, 595
AlwI GGATC 1 cut(s) 844
AoxI GGCC 1 cut(s) 1032
ApeKI GCWGC 4 cut(s) 293, 296, 635, 638
ApoI RAATTY 2 cut(s) 17, 28
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 519
AspA2I CCTAGG 1 cut(s) 364
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 1033
AsuHPI GGTGA 1 cut(s) 529
AsuII TTCGAA 2 cut(s) 100, 1095
AvrII CCTAGG 1 cut(s) 364
BanII GRGCYC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 280, 283, 622, 625
BccI CCATC 2 cut(s) 78, 805
BcgI CGANNNNNNTGC 2 cut(s) 1075, 1109
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 430, 595
BfaI CTAG 5 cut(s) 344, 365, 780, 806, 854
BfoI RGCGCY 1 cut(s) 636
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 4 cut(s) 294, 297, 636, 639
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 4 cut(s) 295, 298, 637, 640
BmcAI AGTACT 2 cut(s) 283, 1102
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 1033
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 1 cut(s) 990
BmuI ACTGGG 1 cut(s) 664
Bpu14I TTCGAA 2 cut(s) 100, 1095
BsaJI CCNNGG 2 cut(s) 364, 960
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 2 cut(s) 940, 1081
BseDI CCNNGG 2 cut(s) 364, 960
BseGI GGATG 2 cut(s) 820, 1005
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 2 cut(s) 940, 1081
BseNI ACTGG 1 cut(s) 670
BseXI GCAGC 4 cut(s) 280, 283, 622, 625
BseYI CCCAGC 1 cut(s) 641
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 1034
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 430, 595
BsnI GGCC 1 cut(s) 1034
Bsp119I TTCGAA 2 cut(s) 100, 1095
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 836
BspANI GGCC 1 cut(s) 1034
BspPI GGATC 1 cut(s) 844
BspT104I TTCGAA 2 cut(s) 100, 1095
BsrDI GCAATG 2 cut(s) 940, 1081
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 364, 960
BssMI GATC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 755
BstBI TTCGAA 2 cut(s) 100, 1095
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 2 cut(s) 820, 1005
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 1 cut(s) 839
BstMAI GTCTC 2 cut(s) 430, 595
BstMBI GATC 1 cut(s) 836
BstMWI GCNNNNNNNGC 3 cut(s) 630, 755, 893
BstNSI RCATGY 2 cut(s) 50, 756
BstV1I GCAGC 4 cut(s) 280, 283, 622, 625
BstX2I RGATCY 1 cut(s) 836
BstYI RGATCY 1 cut(s) 836
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 1034
BtgI CCRYGG 1 cut(s) 960
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 2 cut(s) 820, 1005
BtsI GCAGTG 2 cut(s) 720, 903
BtsIMutI CAGTG 2 cut(s) 720, 903
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 1033
Csp6I GTAC 3 cut(s) 282, 604, 1101
CviAII CATG 5 cut(s) 47, 753, 992, 1004, 1119
CviQI GTAC 3 cut(s) 282, 604, 1101
DdeI CTNAG 1 cut(s) 600
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 364
EcoT22I ATGCAT 2 cut(s) 1005, 1120
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 50, 756, 995, 1007, 1122
FatI CATG 5 cut(s) 46, 752, 991, 1003, 1118
FauNDI CATATG 2 cut(s) 620, 1054
Fnu4HI GCNGC 4 cut(s) 294, 297, 636, 639
FokI GGATG 2 cut(s) 827, 1012
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 294, 297, 636, 639
FspBI CTAG 5 cut(s) 344, 365, 780, 806, 854
GlaI GCGC 1 cut(s) 634
GluI GCNGC 4 cut(s) 294, 297, 636, 639
GsaI CCCAGC 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 635
Hin1II CATG 5 cut(s) 50, 756, 995, 1007, 1122
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 2 cut(s) 336, 849
HindII GTYRAC 2 cut(s) 336, 849
HinfI GANTC 7 cut(s) 162, 384, 462, 572, 615, 737, 850
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 3 cut(s) 336, 504, 849
Hpy188I TCNGA 2 cut(s) 614, 770
Hpy188III TCNNGA 6 cut(s) 172, 394, 682, 694, 806, 1073
Hpy8I GTNNAC 3 cut(s) 336, 504, 849
HpyAV CCTTC 4 cut(s) 245, 428, 688, 787
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 7 cut(s) 211, 624, 896, 933, 1003, 1086, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 630, 755, 893
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 5 cut(s) 50, 756, 995, 1007, 1122
HspAI GCGC 1 cut(s) 633
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 836
Lsp1109I GCAGC 4 cut(s) 280, 283, 622, 625
LweI GCATC 1 cut(s) 990
MaeI CTAG 5 cut(s) 344, 365, 780, 806, 854
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 358, 738
MalI GATC 1 cut(s) 838
MboI GATC 1 cut(s) 836
MboII GAAGA 6 cut(s) 90, 171, 241, 912, 919, 1024
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 836
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 7 cut(s) 17, 28, 82, 264, 455, 520, 942
MlyI GAGTC 3 cut(s) 566, 746, 844
MmeI TCCRAC 2 cut(s) 592, 748
MnlI CCTC 7 cut(s) 32, 137, 242, 268, 556, 907, 935
Mph1103I ATGCAT 2 cut(s) 1005, 1120
MseI TTAA 4 cut(s) 335, 519, 665, 800
MspI CCGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 630, 755, 893
NdeI CATATG 2 cut(s) 620, 1054
NdeII GATC 1 cut(s) 836
NlaIII CATG 5 cut(s) 50, 756, 995, 1007, 1122
NmuCI GTSAC 1 cut(s) 738
NsiI ATGCAT 2 cut(s) 1005, 1120
NspI RCATGY 2 cut(s) 50, 756
NspV TTCGAA 2 cut(s) 100, 1095
PciI ACATGT 1 cut(s) 752
PfeI GAWTC 4 cut(s) 162, 384, 462, 615
PkrI GCNGC 4 cut(s) 295, 298, 637, 640
PleI GAGTC 3 cut(s) 566, 745, 844
PpsI GAGTC 3 cut(s) 566, 745, 844
PscI ACATGT 1 cut(s) 752
PshBI ATTAAT 1 cut(s) 519
PsiI TTATAA 1 cut(s) 941
PspFI CCCAGC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 836
RsaI GTAC 3 cut(s) 283, 605, 1102
RsaNI GTAC 3 cut(s) 282, 604, 1101
SaqAI TTAA 4 cut(s) 335, 519, 665, 800
SatI GCNGC 4 cut(s) 294, 297, 636, 639
Sau3AI GATC 1 cut(s) 836
Sau96I GGNCC 1 cut(s) 1033
ScaI AGTACT 2 cut(s) 283, 1102
SchI GAGTC 3 cut(s) 566, 746, 844
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 93, 113, 181, 329, 420, 472, 601, 859, 918
SfaNI GCATC 1 cut(s) 990
SfuI TTCGAA 2 cut(s) 100, 1095
Sse9I AATT 7 cut(s) 17, 28, 82, 264, 455, 520, 942
SspI AATATT 1 cut(s) 314
SspMI CTAG 5 cut(s) 344, 365, 780, 806, 854
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 100, 171, 1095
TasI AATT 7 cut(s) 17, 28, 82, 264, 455, 520, 942
TatI WGTACW 3 cut(s) 281, 603, 1100
TfiI GAWTC 4 cut(s) 162, 384, 462, 615
Tru1I TTAA 4 cut(s) 335, 519, 665, 800
Tru9I TTAA 4 cut(s) 335, 519, 665, 800
TscAI CASTG 2 cut(s) 720, 903
TseFI GTSAC 1 cut(s) 738
TseI GCWGC 4 cut(s) 293, 296, 635, 638
Tsp45I GTSAC 1 cut(s) 738
TspDTI ATGAA 4 cut(s) 390, 607, 1036, 1041
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 2 cut(s) 720, 903
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 2 cut(s) 17, 28
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 2 cut(s) 50, 756
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 5 cut(s) 344, 365, 780, 806, 854
ZrmI AGTACT 2 cut(s) 283, 1102
Zsp2I ATGCAT 2 cut(s) 1005, 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.