Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018716

Physical Location & Seq

Genomic Coordinates Forward (+)

25420971 .. 25424844

Gene Structure 3874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCAGAAGCTCAGCAAGAAGTTCAGCTTGGCATAACTCAAGATAACAAAGAAGGAAACTCAACCGAGCTAACAAGTGCCAACCACGAACCAACAATCCATCATCGAAGAAATTACAAGCTGTGGTTTCGAATAGCAACCTATATATTCTTTGCCCTCTCCGGCCAATCAACAGCAACACTTCTGGGAAGATTCTACTTCGAGAAAGGTGGAAAGAGCAAATGGGTGGGGGCTCTGGTGCAACTCGCAGGATTTCCAATCCTCCTCCCTTTCTATTTCTTCGTATCCTCCAAAATTAGTCCCACTCCAAGTACTGCTGCTGCTGCTGCTGCTTGTCCTATCCAATATTCAAAACCCACGTCTTTGTTAACAACCCTAGCATTGGTTTATGTTACCCTAGGGCTACTCGTAGCAGGAATCTGCTTCTTGACTTCATTTGGGCTTCAATACCTTCCTGTCTCTACGTTCTCACTCATTTGTGCTTCTCAATTGGGATTCACAGCTCTCTTTTCCTTTTTCCTAAACTCCCAAAAATTCACTCCATTTGTGATTAATTCCATTGTGCTACTCACCATTTCCTCCATTCTCCTTGTGTTCAATACCGACTCATCATCAGTATTAGTCTCTAAAGCTAAGTACAAAGTCGGATTCATATGCACCATTGGCGCTGCTGCTGGGAACGGATTAGCACTTGCCTTAACCCAGTTCGCCTTCACGAAAATAATCAAGAAGCAAACATTTAGAGCAGTGGTGGATTTGATAATCTATGAGTCACTAATAGCAACATGTGCTACTTTGGTCGGACTTTTTGCTAGTGGAGAGTGGAAGGGCTTAAATCTAGAGATGGATGAGTTTCAAACAGGAAAGGGATCTTATGTGTTGACTCTAGCTTGGACAATGATTTCTTGGCAAGTTTTTGCTATTGGTGCAGTGGGATTGATATTTGAGGTTTCTTCCCTCTTCTGCAATGTTATAATTGCTTTGGGTTTGCCCGTGGTTCAAGTTTTGGCTGTGATTGTTTTCCATGACAGGATGCATGGTTTGAAGATTGTGGCAATAGTTTTGGCCCTCTGGGGTTTCATTTCATATGTCTATCAGCAGTATCTTGATGACCATTGCAAATCATTCGAAAGTTCTGAAAATGAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

384

Amino Acids

41.97

Weight (kDa)

8.38

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	45 - 371	1e-115	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18190
rosa_chinensis	RchiOBHm_Chr7g0210311
rosa_laevigata	RLG00000003050
rosa_multiflora	Rmu_sc0004503.1_g000004
rosa_roxburghii	Rroxscaffold_3G00248440
rosa_samantha	Rh7AG253500 Rh7CG270400 Rh7DG261100
rosa_wichuraiana	Rw7G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
AclWI	GGATC	1 cut(s)	877
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	2 cut(s)	313, 638
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	785
AgsI	TTSAA	6 cut(s)	351, 446, 598, 857, 1001, 1045
AjiI	CACGTC	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	7 cut(s)	11, 28, 70, 121, 503, 632, 890
AluI	AGCT	7 cut(s)	11, 28, 70, 121, 503, 632, 890
Alw26I	GTCTC	2 cut(s)	463, 628
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	2 cut(s)	163, 1065
ApeKI	GCWGC	7 cut(s)	317, 320, 323, 326, 329, 668, 671
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AseI	ATTAAT	1 cut(s)	552
AspA2I	CCTAGG	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	562
AsuII	TTCGAA	2 cut(s)	130, 1128
AvrII	CCTAGG	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	235
BbvI	GCAGC	7 cut(s)	304, 307, 310, 313, 316, 655, 658
BccI	CCATC	2 cut(s)	108, 838
BcgI	CGANNNNNNTGC	2 cut(s)	1108, 1142
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	463, 628
BfaI	CTAG	5 cut(s)	377, 398, 813, 839, 887
BfoI	RGCGCY	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	7 cut(s)	318, 321, 324, 327, 330, 669, 672
BlnI	CCTAGG	1 cut(s)	397
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	7 cut(s)	319, 322, 325, 328, 331, 670, 673
BmcAI	AGTACT	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	1066
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	1 cut(s)	1023
BmuI	ACTGGG	1 cut(s)	697
Bpu1102I	GCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	130, 1128
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	397, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	2 cut(s)	973, 1114
BseDI	CCNNGG	2 cut(s)	397, 993
BseGI	GGATG	2 cut(s)	853, 1038
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	2 cut(s)	973, 1114
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	7 cut(s)	304, 307, 310, 313, 316, 655, 658
BseYI	CCCAGC	1 cut(s)	674
BsgI	GTGCAG	1 cut(s)	948
BshFI	GGCC	2 cut(s)	165, 1067
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	463, 628
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	165, 1067
Bsp119I	TTCGAA	2 cut(s)	130, 1128
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	869
Bsp1720I	GCTNAGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	165, 1067
BspCNI	CTCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	877
BspT104I	TTCGAA	2 cut(s)	130, 1128
BsrDI	GCAATG	2 cut(s)	973, 1114
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	397, 993
BssMI	GATC	1 cut(s)	869
BssT1I	CCWWGG	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	965
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstBI	TTCGAA	2 cut(s)	130, 1128
BstDEI	CTNAG	2 cut(s)	12, 633
BstDSI	CCRYGG	1 cut(s)	993
BstF5I	GGATG	2 cut(s)	853, 1038
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	1 cut(s)	872
BstMAI	GTCTC	2 cut(s)	463, 628
BstMBI	GATC	1 cut(s)	869
BstMWI	GCNNNNNNNGC	6 cut(s)	323, 326, 329, 663, 788, 926
BstNSI	RCATGY	1 cut(s)	789
BstV1I	GCAGC	7 cut(s)	304, 307, 310, 313, 316, 655, 658
BstX2I	RGATCY	1 cut(s)	869
BstYI	RGATCY	1 cut(s)	869
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	165, 1067
BtgI	CCRYGG	1 cut(s)	993
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	853, 1038
BtsI	GCAGTG	2 cut(s)	753, 936
BtsIMutI	CAGTG	2 cut(s)	753, 936
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	2 cut(s)	312, 637
CviAII	CATG	4 cut(s)	786, 1025, 1037, 1152
CviQI	GTAC	2 cut(s)	312, 637
DdeI	CTNAG	2 cut(s)	12, 633
DpnI	GATC	1 cut(s)	871
DpnII	GATC	1 cut(s)	869
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	965
EarI	CTCTTC	1 cut(s)	965
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	2 cut(s)	1038, 1153
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	4 cut(s)	789, 1028, 1040, 1155
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	4 cut(s)	785, 1024, 1036, 1151
FauNDI	CATATG	2 cut(s)	653, 1087
Fnu4HI	GCNGC	7 cut(s)	318, 321, 324, 327, 330, 669, 672
FokI	GGATG	2 cut(s)	860, 1045
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	7 cut(s)	318, 321, 324, 327, 330, 669, 672
FspBI	CTAG	5 cut(s)	377, 398, 813, 839, 887
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	7 cut(s)	318, 321, 324, 327, 330, 669, 672
GsaI	CCCAGC	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	165, 1067
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	789, 1028, 1040, 1155
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	2 cut(s)	369, 882
HindII	GTYRAC	2 cut(s)	369, 882
HinfI	GANTC	7 cut(s)	192, 417, 495, 605, 648, 770, 883
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	369, 882
Hpy188I	TCNGA	3 cut(s)	647, 803, 1138
Hpy188III	TCNNGA	7 cut(s)	41, 202, 427, 715, 727, 839, 1106
Hpy8I	GTNNAC	2 cut(s)	369, 882
HpyAV	CCTTC	4 cut(s)	47, 461, 721, 820
HpyCH4IV	ACGT	2 cut(s)	359, 464
HpyCH4V	TGCA	7 cut(s)	241, 657, 929, 966, 1036, 1119, 1151
HpyF10VI	GCNNNNNNNGC	6 cut(s)	323, 326, 329, 663, 788, 926
HpyF3I	CTNAG	2 cut(s)	12, 633
HpySE526I	ACGT	2 cut(s)	359, 464
Hsp92II	CATG	4 cut(s)	789, 1028, 1040, 1155
HspAI	GCGC	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	869
Lsp1109I	GCAGC	7 cut(s)	304, 307, 310, 313, 316, 655, 658
LweI	GCATC	1 cut(s)	1023
MaeI	CTAG	5 cut(s)	377, 398, 813, 839, 887
MaeII	ACGT	2 cut(s)	359, 464
MaeIII	GTNAC	2 cut(s)	391, 771
MalI	GATC	1 cut(s)	871
MboI	GATC	1 cut(s)	869
MboII	GAAGA	6 cut(s)	120, 201, 271, 945, 952, 1057
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	1 cut(s)	869
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	6 cut(s)	112, 294, 488, 533, 553, 975
MlyI	GAGTC	3 cut(s)	599, 779, 877
MmeI	TCCRAC	2 cut(s)	625, 781
MnlI	CCTC	8 cut(s)	167, 272, 275, 298, 589, 940, 968, 1079
Mph1103I	ATGCAT	2 cut(s)	1038, 1153
MseI	TTAA	4 cut(s)	368, 552, 698, 833
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	488
MwoI	GCNNNNNNNGC	6 cut(s)	323, 326, 329, 663, 788, 926
NdeI	CATATG	2 cut(s)	653, 1087
NdeII	GATC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	789, 1028, 1040, 1155
NmuCI	GTSAC	1 cut(s)	771
NsiI	ATGCAT	2 cut(s)	1038, 1153
NspI	RCATGY	1 cut(s)	789
NspV	TTCGAA	2 cut(s)	130, 1128
PciI	ACATGT	1 cut(s)	785
PfeI	GAWTC	4 cut(s)	192, 417, 495, 648
PkrI	GCNGC	7 cut(s)	319, 322, 325, 328, 331, 670, 673
PleI	GAGTC	3 cut(s)	599, 778, 877
PpsI	GAGTC	3 cut(s)	599, 778, 877
PscI	ACATGT	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	974
PspFI	CCCAGC	1 cut(s)	674
PspPI	GGNCC	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	869
RsaI	GTAC	2 cut(s)	313, 638
RsaNI	GTAC	2 cut(s)	312, 637
SaqAI	TTAA	4 cut(s)	368, 552, 698, 833
SatI	GCNGC	7 cut(s)	318, 321, 324, 327, 330, 669, 672
Sau3AI	GATC	1 cut(s)	869
Sau96I	GGNCC	1 cut(s)	1066
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	3 cut(s)	599, 779, 877
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	1023
SfuI	TTCGAA	2 cut(s)	130, 1128
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	112, 294, 488, 533, 553, 975
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	5 cut(s)	377, 398, 813, 839, 887
StyI	CCWWGG	1 cut(s)	397
TaiI	ACGT	2 cut(s)	362, 467
TaqI	TCGA	4 cut(s)	106, 130, 201, 1128
TasI	AATT	6 cut(s)	112, 294, 488, 533, 553, 975
TatI	WGTACW	2 cut(s)	311, 636
TfiI	GAWTC	4 cut(s)	192, 417, 495, 648
Tru1I	TTAA	4 cut(s)	368, 552, 698, 833
Tru9I	TTAA	4 cut(s)	368, 552, 698, 833
TscAI	CASTG	2 cut(s)	753, 936
TseFI	GTSAC	1 cut(s)	771
TseI	GCWGC	7 cut(s)	317, 320, 323, 326, 329, 668, 671
Tsp45I	GTSAC	1 cut(s)	771
TspDTI	ATGAA	4 cut(s)	423, 640, 1069, 1074
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	2 cut(s)	753, 936
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	1 cut(s)	789
XmaJI	CCTAGG	1 cut(s)	397
XspI	CTAG	5 cut(s)	377, 398, 813, 839, 887
ZrmI	AGTACT	1 cut(s)	313
Zsp2I	ATGCAT	2 cut(s)	1038, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.