Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004503.1

Orthogroup ID

OG0018716

Physical Location & Seq

Genomic Coordinates Reverse (-)

18567 .. 21427

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004503.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atggcagaagctcagcaagaagttcagcttggcataactcaagataacaaagagggaaactcaactgagctaacgagtgccaaccacgaaccaacaatccatcatcgaagaaattacaagctgtggtttcgaatagcaacctatatattctttgccctctccggccaatcaacaggaacacttctgggaagattctacttcgagaaaggtggaaagagcaaatgggtgggggctctggtgcaactcgcaggatttccaatcctccttcctttctatttcttcgtatcctccaaaattagtcccactccaagtactactactactgctgctgctgctgcttgtcctatccaatattcaaaacccaagtctttgttaacaaccctagcattggtttatgttaccttagggctactcatagcaggaagctgcttcttgacttcctttgggcttcaataccttcctgtctctacgttctcactcatttgtgcttctcaattgggattcacagctttcttttcctttttcctaaactcccaaaagttcactccatttgtgattaattccattgtgctactcaccgtttcctccattctccttgtgttcaataccgactcatcatcagtattagtctctaaagctaagtacgaagtaggattcatatgcaccattggcgctgctgctgggaccggattaggacttgccttaacccagttcgccttcacgaaaataatcaacaagcaaacatttagagcagtggtggatttgataatctatgagtcactaatagcaacatgtgctactttggtcggactttttgctagtggagagtggaagggcttaaatctagagatggatgagtttcaaacaggaaagggatcttatgtgttgactctagcttgggcaatgatttcttggcaagtttttgttattggtgcagtgggattgatatttgaggtttcttccctcttctgcaatgttataagtgctttgggtttgcctgtggttcaagttttggctgtgattgttttccatgacaggatgcatggtttgaagattgtggcaatagttttggccctctggggggtcatggatattcgaaacaagctgacctattcagaaggtatcccgtttcgcagtcactctcagttcgtcaccgtgcctccagcgtcgggcctccgtgagcggcgctcctccgcttcgctgtgccaccacgactctgcctcagtctcccactgttccacagcgcccctccactcaagtagcaaagcagaaagccagaaactgttggttacactcggggttcgatttctgggtttcacttttcaagcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

444

Amino Acids

48.28

Weight (kDa)

9.12

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18190
rosa_chinensis	RchiOBHm_Chr7g0210311
rosa_laevigata	RLG00000003050
rosa_multiflora	Rmu_sc0004503.1_g000004
rosa_roxburghii	Rroxscaffold_3G00248440
rosa_samantha	Rh7AG253500 Rh7CG270400 Rh7DG261100
rosa_wichuraiana	Rw7G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	980
AccBSI	CCGCTC	1 cut(s)	1183
AciI	CCGC	2 cut(s)	1183, 1194
AclWI	GGATC	1 cut(s)	883
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	2 cut(s)	313, 644
AfiI	CCNNNNNNNGG	4 cut(s)	388, 1080, 1081, 1169
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	7 cut(s)	357, 452, 604, 863, 1007, 1051, 1325
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
Alw26I	GTCTC	3 cut(s)	469, 634, 1231
AlwI	GGATC	1 cut(s)	883
AlwNI	CAGNNNCTG	1 cut(s)	1282
Ama87I	CYCGRG	1 cut(s)	1295
AoxI	GGCC	3 cut(s)	163, 1071, 1171
ApeKI	GCWGC	7 cut(s)	326, 329, 332, 335, 426, 674, 677
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	558
AspLEI	GCGC	3 cut(s)	674, 1188, 1246
AspS9I	GGNCC	3 cut(s)	684, 1072, 1171
AsuHPI	GGTGA	2 cut(s)	568, 1144
AsuII	TTCGAA	2 cut(s)	130, 1096
AvaI	CYCGRG	1 cut(s)	1295
AvaII	GGWCC	1 cut(s)	684
AxyI	CCTNAGG	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	235
BbvI	GCAGC	7 cut(s)	313, 316, 319, 322, 413, 661, 664
BccI	CCATC	2 cut(s)	108, 844
BciVI	GTATCC	2 cut(s)	295, 1133
BcoDI	GTCTC	3 cut(s)	469, 634, 1231
BfaI	CTAG	4 cut(s)	383, 819, 845, 893
BfoI	RGCGCY	3 cut(s)	675, 1189, 1247
BfuI	GTATCC	2 cut(s)	295, 1133
BisI	GCNGC	8 cut(s)	327, 330, 333, 336, 427, 675, 678, 1184
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	8 cut(s)	328, 331, 334, 337, 428, 676, 679, 1185
BmcAI	AGTACT	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	1295
BmgT120I	GGNCC	3 cut(s)	684, 1072, 1171
BmiI	GGNNCC	1 cut(s)	685
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	1 cut(s)	1029
BmuI	ACTGGG	1 cut(s)	703
BplI	GAGNNNNNCTC	4 cut(s)	44, 76, 1172, 1204
BpmI	CTGGAG	1 cut(s)	1146
Bpu1102I	GCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	130, 1096
BpuEI	CTTGAG	2 cut(s)	24, 1240
BsaWI	WCCGGW	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	1144, 1174
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 1080, 1081, 1169
Bse1I	ACTGG	1 cut(s)	709
Bse21I	CCTNAGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	909, 979
BseGI	GGATG	2 cut(s)	859, 1044
BseLI	CCNNNNNNNGG	4 cut(s)	388, 1080, 1081, 1169
BseMI	GCAATG	2 cut(s)	909, 979
BseMII	CTCAG	4 cut(s)	26, 57, 1157, 1236
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	1180
BseXI	GCAGC	7 cut(s)	313, 316, 319, 322, 413, 661, 664
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	3 cut(s)	165, 1073, 1173
BsiHKCI	CYCGRG	1 cut(s)	1295
BsiSI	CCGG	2 cut(s)	162, 687
BslFI	GGGAC	2 cut(s)	285, 697
BslI	CCNNNNNNNGG	4 cut(s)	388, 1080, 1081, 1169
BsmAI	GTCTC	3 cut(s)	469, 634, 1231
BsmFI	GGGAC	2 cut(s)	285, 697
BsnI	GGCC	3 cut(s)	165, 1073, 1173
BsoBI	CYCGRG	1 cut(s)	1295
Bsp119I	TTCGAA	2 cut(s)	130, 1096
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	875
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	1183, 1194
BspANI	GGCC	3 cut(s)	165, 1073, 1173
BspCNI	CTCAG	4 cut(s)	25, 58, 1156, 1235
BspLI	GGNNCC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	883
BspT104I	TTCGAA	2 cut(s)	130, 1096
BsrBI	CCGCTC	1 cut(s)	1183
BsrDI	GCAATG	2 cut(s)	909, 979
BsrI	ACTGG	1 cut(s)	709
BssMI	GATC	1 cut(s)	875
Bst4CI	ACNGT	4 cut(s)	580, 1156, 1235, 1284
Bst6I	CTCTTC	1 cut(s)	971
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBI	TTCGAA	2 cut(s)	130, 1096
BstDEI	CTNAG	6 cut(s)	12, 66, 403, 639, 1143, 1222
BstF5I	GGATG	2 cut(s)	859, 1044
BstH2I	RGCGCY	3 cut(s)	675, 1189, 1247
BstHHI	GCGC	3 cut(s)	674, 1188, 1246
BstKTI	GATC	1 cut(s)	878
BstMAI	GTCTC	3 cut(s)	469, 634, 1231
BstMBI	GATC	1 cut(s)	875
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 335, 669, 794
BstNSI	RCATGY	1 cut(s)	795
BstV1I	GCAGC	7 cut(s)	313, 316, 319, 322, 413, 661, 664
BstX2I	RGATCY	1 cut(s)	875
BstYI	RGATCY	1 cut(s)	875
Bsu36I	CCTNAGG	1 cut(s)	403
BsuI	GTATCC	2 cut(s)	295, 1133
BsuRI	GGCC	3 cut(s)	165, 1073, 1173
BtsCI	GGATG	2 cut(s)	859, 1044
BtsI	GCAGTG	2 cut(s)	759, 942
BtsIMutI	CAGTG	3 cut(s)	759, 942, 1231
CaiI	CAGNNNCTG	1 cut(s)	1282
CfoI	GCGC	3 cut(s)	674, 1188, 1246
Cfr13I	GGNCC	3 cut(s)	684, 1072, 1171
CseI	GACGC	1 cut(s)	1155
Csp6I	GTAC	2 cut(s)	312, 643
CviAII	CATG	4 cut(s)	792, 1031, 1043, 1087
CviQI	GTAC	2 cut(s)	312, 643
DdeI	CTNAG	6 cut(s)	12, 66, 403, 639, 1143, 1222
DpnI	GATC	1 cut(s)	877
DpnII	GATC	1 cut(s)	875
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	971
EarI	CTCTTC	1 cut(s)	971
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	1295
EcoT22I	ATGCAT	1 cut(s)	1044
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	4 cut(s)	795, 1034, 1046, 1090
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	285, 697
FatI	CATG	4 cut(s)	791, 1030, 1042, 1086
FauNDI	CATATG	1 cut(s)	659
Fnu4HI	GCNGC	8 cut(s)	327, 330, 333, 336, 427, 675, 678, 1184
FokI	GGATG	2 cut(s)	866, 1051
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	8 cut(s)	327, 330, 333, 336, 427, 675, 678, 1184
FspBI	CTAG	4 cut(s)	383, 819, 845, 893
GlaI	GCGC	3 cut(s)	673, 1187, 1245
GluI	GCNGC	8 cut(s)	327, 330, 333, 336, 427, 675, 678, 1184
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	1146
HaeII	RGCGCY	3 cut(s)	675, 1189, 1247
HaeIII	GGCC	3 cut(s)	165, 1073, 1173
HapII	CCGG	2 cut(s)	162, 687
HgaI	GACGC	1 cut(s)	1155
HhaI	GCGC	3 cut(s)	674, 1188, 1246
Hin1II	CATG	4 cut(s)	795, 1034, 1046, 1090
Hin6I	GCGC	3 cut(s)	672, 1186, 1244
HinP1I	GCGC	3 cut(s)	672, 1186, 1244
HincII	GTYRAC	2 cut(s)	375, 888
HindII	GTYRAC	2 cut(s)	375, 888
HindIII	AAGCTT	1 cut(s)	1326
HinfI	GANTC	7 cut(s)	192, 501, 611, 654, 776, 889, 1214
HpaI	GTTAAC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	162, 687
HphI	GGTGA	2 cut(s)	568, 1144
Hpy166II	GTNNAC	3 cut(s)	375, 543, 888
Hpy188I	TCNGA	2 cut(s)	809, 1117
Hpy188III	TCNNGA	5 cut(s)	41, 202, 433, 721, 845
Hpy8I	GTNNAC	3 cut(s)	375, 543, 888
Hpy99I	CGWCG	1 cut(s)	1171
HpyAV	CCTTC	5 cut(s)	275, 467, 727, 826, 1112
HpyCH4III	ACNGT	4 cut(s)	580, 1156, 1235, 1284
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	241, 663, 935, 972, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 335, 669, 794
HpyF3I	CTNAG	6 cut(s)	12, 66, 403, 639, 1143, 1222
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	4 cut(s)	795, 1034, 1046, 1090
HspAI	GCGC	3 cut(s)	672, 1186, 1244
KspAI	GTTAAC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	875
LmnI	GCTCC	1 cut(s)	1193
Lsp1109I	GCAGC	7 cut(s)	313, 316, 319, 322, 413, 661, 664
LweI	GCATC	1 cut(s)	1029
MaeI	CTAG	4 cut(s)	383, 819, 845, 893
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	397, 777, 1136, 1150, 1288
MalI	GATC	1 cut(s)	877
MbiI	CCGCTC	1 cut(s)	1183
MboI	GATC	1 cut(s)	875
MboII	GAAGA	6 cut(s)	120, 201, 271, 951, 958, 1063
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	4 cut(s)	112, 294, 494, 559
MlyI	GAGTC	4 cut(s)	605, 785, 883, 1208
MmeI	TCCRAC	1 cut(s)	787
Mph1103I	ATGCAT	1 cut(s)	1044
MseI	TTAA	4 cut(s)	374, 558, 704, 839
MspI	CCGG	2 cut(s)	162, 687
MunI	CAATTG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	332, 335, 669, 794
NdeI	CATATG	1 cut(s)	659
NdeII	GATC	1 cut(s)	875
NlaIII	CATG	4 cut(s)	795, 1034, 1046, 1090
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	3 cut(s)	777, 1136, 1150
NsiI	ATGCAT	1 cut(s)	1044
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	2 cut(s)	130, 1096
PciI	ACATGT	1 cut(s)	791
PfeI	GAWTC	3 cut(s)	192, 501, 654
PkrI	GCNGC	8 cut(s)	328, 331, 334, 337, 428, 676, 679, 1185
PleI	GAGTC	4 cut(s)	605, 784, 883, 1208
PpsI	GAGTC	4 cut(s)	605, 784, 883, 1208
PscI	ACATGT	1 cut(s)	791
PshBI	ATTAAT	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	980
PspFI	CCCAGC	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	3 cut(s)	684, 1072, 1171
PstNI	CAGNNNCTG	1 cut(s)	1282
PsuI	RGATCY	1 cut(s)	875
RsaI	GTAC	2 cut(s)	313, 644
RsaNI	GTAC	2 cut(s)	312, 643
SaqAI	TTAA	4 cut(s)	374, 558, 704, 839
SatI	GCNGC	8 cut(s)	327, 330, 333, 336, 427, 675, 678, 1184
Sau3AI	GATC	1 cut(s)	875
Sau96I	GGNCC	3 cut(s)	684, 1072, 1171
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	4 cut(s)	605, 785, 883, 1208
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	1029
SfuI	TTCGAA	2 cut(s)	130, 1096
SinI	GGWCC	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	39, 1255
SmoI	CTYRAG	2 cut(s)	39, 1255
Sse9I	AATT	4 cut(s)	112, 294, 494, 559
SsiI	CCGC	2 cut(s)	1183, 1194
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	4 cut(s)	383, 819, 845, 893
TaaI	ACNGT	4 cut(s)	580, 1156, 1235, 1284
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	5 cut(s)	106, 130, 201, 1096, 1303
TasI	AATT	4 cut(s)	112, 294, 494, 559
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	3 cut(s)	192, 501, 654
Tru1I	TTAA	4 cut(s)	374, 558, 704, 839
Tru9I	TTAA	4 cut(s)	374, 558, 704, 839
TscAI	CASTG	3 cut(s)	759, 942, 1238
TseFI	GTSAC	3 cut(s)	777, 1136, 1150
TseI	GCWGC	7 cut(s)	326, 329, 332, 335, 426, 674, 677
Tsp45I	GTSAC	3 cut(s)	777, 1136, 1150
TspDTI	ATGAA	1 cut(s)	646
TspGWI	ACGGA	1 cut(s)	1166
TspRI	CASTG	3 cut(s)	759, 942, 1238
VpaK11BI	GGWCC	1 cut(s)	684
VspI	ATTAAT	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	1 cut(s)	795
XspI	CTAG	4 cut(s)	383, 819, 845, 893
ZrmI	AGTACT	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.