Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018716

Physical Location & Seq

Genomic Coordinates Reverse (-)

43645679 .. 43648104

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAGAAGCTCAGCAAGAAGTTCAGCTTGGCATAACTCAAGATAACAAAGAAGGAAACTCAACTGAGCTAACAAGTGCCAACCACGAACCAACAATCCATCATCGAAGAAATTACAAGCTGTGGTTTCGAATAGCAACCTATATATTCTTTGCCCTCTCCGGCCAATCAACAGCAACACTTCTGGGAAGATTCTACTTCGAGAAAGGTGGAAAGAGCAAATGGGTGGGGGCTCTGGTGCAACTCGCAGGATTTCCAATCCTCCTTCCTTTCTATTTCTTCGTATCCTCCAAAATTAGTCCCACTCCAAGTACTGCTGCTGCTGCTGCTTGGCCTATCCAATATTCAAAACCCACGTCTTTGTTAACAACCCTAGCATTGGTTTATGTTACCCTAGGGCTACTCCTAGCGGGAATCTGCTTCTTGACTTCATTTGGGCTTCAATACCTTCCTGTCTCTACGTTCTCACTCATTTGTGCTTCTCAATTGGGATTCACAGCTCTCTTTTCCTTTTTCCTAAACTCCCAAAAGTTCACTCCATTTGTGATTAATTCCATTGTGCTACTCACCATTTCCTCCATTCTCCTTGTGTTCAATACTGACTCATCATCAGTATTAGTCTCTAAAGCTAAGTACGAAGTCGGATTCATATGCACCATTGGCGCTGCTGCTGGGAACGGATTAGCACTTGCCTTAACCCAGTTCGCCTTCACGAAAATAATCAAGAAGCAAACATTTAGAGCAGTGGTGGATTTGATAATCTATGAGTCACTAATAGCAACATGTGCTACTTTGGTCGGACTTTTTGCTAGTGGAGAGTGGAAGGGCTTAAATCTAGAGATGGATGAGTTTCAAACAGGAAAGGGATCTTATGTGTTGACTCTAGCTTGGACAATGATTTCTTGGCAAGTTTTTGCTATTGGTGCAGTGGGATTGATATTTGAGGTTTCTTCCCTCTTCTGCAATGTTATAATTGCTTTGGGTTTGCCCGTGGTTCAAGTTTTGGCTGTGATTGTTTTCCATGACAGGATGCAAGGTTTGAAGATTGTGGCAATAGTTTTGGCCCTCTGGGGTTTCATTTCATATGTCTATCAGCAGTATCTTGATGACCATTGCAAAACATTCGAAAGTACTGAAAATGAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

384

Amino Acids

42.02

Weight (kDa)

7.59

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	45 - 370	6e-116	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18190
rosa_chinensis	RchiOBHm_Chr7g0210311
rosa_laevigata	RLG00000003050
rosa_multiflora	Rmu_sc0004503.1_g000004
rosa_roxburghii	Rroxscaffold_3G00248440
rosa_samantha	Rh7AG253500 Rh7CG270400 Rh7DG261100
rosa_wichuraiana	Rw7G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	971
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	874
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	3 cut(s)	313, 635, 1132
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	782
AgsI	TTSAA	6 cut(s)	348, 443, 595, 854, 998, 1042
AjiI	CACGTC	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	7 cut(s)	11, 28, 70, 121, 500, 629, 887
AluI	AGCT	7 cut(s)	11, 28, 70, 121, 500, 629, 887
Alw26I	GTCTC	2 cut(s)	460, 625
AlwI	GGATC	1 cut(s)	874
AoxI	GGCC	3 cut(s)	163, 332, 1062
ApeKI	GCWGC	6 cut(s)	317, 320, 323, 326, 665, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AseI	ATTAAT	1 cut(s)	549
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	1063
AsuHPI	GGTGA	1 cut(s)	559
AsuII	TTCGAA	2 cut(s)	130, 1125
AvrII	CCTAGG	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	235
BbvI	GCAGC	6 cut(s)	304, 307, 310, 313, 652, 655
BccI	CCATC	2 cut(s)	108, 835
BcgI	CGANNNNNNTGC	2 cut(s)	1105, 1139
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	460, 625
BfaI	CTAG	6 cut(s)	374, 395, 407, 810, 836, 884
BfoI	RGCGCY	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	6 cut(s)	318, 321, 324, 327, 666, 669
BlnI	CCTAGG	1 cut(s)	394
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	6 cut(s)	319, 322, 325, 328, 667, 670
BmcAI	AGTACT	2 cut(s)	313, 1132
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	1063
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	1 cut(s)	1020
BmuI	ACTGGG	1 cut(s)	694
Bpu1102I	GCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	130, 1125
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	394, 990
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	970, 1111
BseDI	CCNNGG	2 cut(s)	394, 990
BseGI	GGATG	2 cut(s)	850, 1035
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	2 cut(s)	970, 1111
BseMII	CTCAG	2 cut(s)	26, 57
BseNI	ACTGG	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	304, 307, 310, 313, 652, 655
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	945
BshFI	GGCC	3 cut(s)	165, 334, 1064
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	460, 625
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	165, 334, 1064
Bsp119I	TTCGAA	2 cut(s)	130, 1125
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	866
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	3 cut(s)	165, 334, 1064
BspCNI	CTCAG	2 cut(s)	25, 58
BspPI	GGATC	1 cut(s)	874
BspT104I	TTCGAA	2 cut(s)	130, 1125
BsrDI	GCAATG	2 cut(s)	970, 1111
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	394, 990
BssMI	GATC	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	962
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBI	TTCGAA	2 cut(s)	130, 1125
BstDEI	CTNAG	3 cut(s)	12, 66, 630
BstDSI	CCRYGG	1 cut(s)	990
BstF5I	GGATG	2 cut(s)	850, 1035
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	1 cut(s)	869
BstMAI	GTCTC	2 cut(s)	460, 625
BstMBI	GATC	1 cut(s)	866
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 326, 660, 785, 923
BstNSI	RCATGY	1 cut(s)	786
BstV1I	GCAGC	6 cut(s)	304, 307, 310, 313, 652, 655
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	165, 334, 1064
BtgI	CCRYGG	1 cut(s)	990
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	850, 1035
BtsI	GCAGTG	2 cut(s)	750, 933
BtsIMutI	CAGTG	2 cut(s)	750, 933
CfoI	GCGC	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	1063
Csp6I	GTAC	3 cut(s)	312, 634, 1131
CviAII	CATG	3 cut(s)	783, 1022, 1149
CviQI	GTAC	3 cut(s)	312, 634, 1131
DdeI	CTNAG	3 cut(s)	12, 66, 630
DpnI	GATC	1 cut(s)	868
DpnII	GATC	1 cut(s)	866
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	962
EarI	CTCTTC	1 cut(s)	962
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	3 cut(s)	786, 1025, 1152
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	782, 1021, 1148
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	2 cut(s)	650, 1084
Fnu4HI	GCNGC	6 cut(s)	318, 321, 324, 327, 666, 669
FokI	GGATG	2 cut(s)	857, 1042
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	6 cut(s)	318, 321, 324, 327, 666, 669
FspBI	CTAG	6 cut(s)	374, 395, 407, 810, 836, 884
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	6 cut(s)	318, 321, 324, 327, 666, 669
GsaI	CCCAGC	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	165, 334, 1064
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	665
Hin1II	CATG	3 cut(s)	786, 1025, 1152
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HincII	GTYRAC	2 cut(s)	366, 879
HindII	GTYRAC	2 cut(s)	366, 879
HinfI	GANTC	7 cut(s)	192, 414, 492, 602, 645, 767, 880
HpaI	GTTAAC	1 cut(s)	366
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	366, 534, 879
Hpy188I	TCNGA	2 cut(s)	644, 800
Hpy188III	TCNNGA	7 cut(s)	41, 202, 424, 712, 724, 836, 1103
Hpy8I	GTNNAC	3 cut(s)	366, 534, 879
HpyAV	CCTTC	5 cut(s)	47, 275, 458, 718, 817
HpyCH4IV	ACGT	2 cut(s)	356, 461
HpyCH4V	TGCA	7 cut(s)	241, 654, 926, 963, 1033, 1116, 1148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 326, 660, 785, 923
HpyF3I	CTNAG	3 cut(s)	12, 66, 630
HpySE526I	ACGT	2 cut(s)	356, 461
Hsp92II	CATG	3 cut(s)	786, 1025, 1152
HspAI	GCGC	1 cut(s)	663
KspAI	GTTAAC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	866
Lsp1109I	GCAGC	6 cut(s)	304, 307, 310, 313, 652, 655
LweI	GCATC	1 cut(s)	1020
MaeI	CTAG	6 cut(s)	374, 395, 407, 810, 836, 884
MaeII	ACGT	2 cut(s)	356, 461
MaeIII	GTNAC	2 cut(s)	388, 768
MalI	GATC	1 cut(s)	868
MboI	GATC	1 cut(s)	866
MboII	GAAGA	6 cut(s)	120, 201, 271, 942, 949, 1054
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	5 cut(s)	112, 294, 485, 550, 972
MlyI	GAGTC	3 cut(s)	596, 776, 874
MmeI	TCCRAC	2 cut(s)	622, 778
MnlI	CCTC	7 cut(s)	167, 272, 298, 586, 937, 965, 1076
Mph1103I	ATGCAT	1 cut(s)	1150
MseI	TTAA	4 cut(s)	365, 549, 695, 830
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	485
MwoI	GCNNNNNNNGC	5 cut(s)	323, 326, 660, 785, 923
NdeI	CATATG	2 cut(s)	650, 1084
NdeII	GATC	1 cut(s)	866
NlaIII	CATG	3 cut(s)	786, 1025, 1152
NmuCI	GTSAC	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	1 cut(s)	786
NspV	TTCGAA	2 cut(s)	130, 1125
PciI	ACATGT	1 cut(s)	782
PfeI	GAWTC	4 cut(s)	192, 414, 492, 645
PkrI	GCNGC	6 cut(s)	319, 322, 325, 328, 667, 670
PleI	GAGTC	3 cut(s)	596, 775, 874
PpsI	GAGTC	3 cut(s)	596, 775, 874
PscI	ACATGT	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	3 cut(s)	313, 635, 1132
RsaNI	GTAC	3 cut(s)	312, 634, 1131
SaqAI	TTAA	4 cut(s)	365, 549, 695, 830
SatI	GCNGC	6 cut(s)	318, 321, 324, 327, 666, 669
Sau3AI	GATC	1 cut(s)	866
Sau96I	GGNCC	1 cut(s)	1063
ScaI	AGTACT	2 cut(s)	313, 1132
SchI	GAGTC	3 cut(s)	596, 776, 874
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	1020
SfuI	TTCGAA	2 cut(s)	130, 1125
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	5 cut(s)	112, 294, 485, 550, 972
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	6 cut(s)	374, 395, 407, 810, 836, 884
StyI	CCWWGG	1 cut(s)	394
TaiI	ACGT	2 cut(s)	359, 464
TaqI	TCGA	4 cut(s)	106, 130, 201, 1125
TasI	AATT	5 cut(s)	112, 294, 485, 550, 972
TatI	WGTACW	2 cut(s)	311, 1130
TfiI	GAWTC	4 cut(s)	192, 414, 492, 645
Tru1I	TTAA	4 cut(s)	365, 549, 695, 830
Tru9I	TTAA	4 cut(s)	365, 549, 695, 830
TscAI	CASTG	2 cut(s)	750, 933
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	6 cut(s)	317, 320, 323, 326, 665, 668
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	4 cut(s)	420, 637, 1066, 1071
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	750, 933
VspI	ATTAAT	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	835
XceI	RCATGY	1 cut(s)	786
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	6 cut(s)	374, 395, 407, 810, 836, 884
ZrmI	AGTACT	2 cut(s)	313, 1132
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.