Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013767

Physical Location & Seq

Genomic Coordinates Forward (+)

29318328 .. 29320208

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAAGAAGGTATGGCATTTGATCCCAACAAAGCTTGACAACAGCTACTTCAAGAACTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGGTTCAGCAATATGCAGTGAACAACGAGCTTTTCTCGAGCAATTTTCCAAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

61

Amino Acids

6.95

Weight (kDa)

9.46

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	9 - 49	4.3e-09	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013767)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024911 RchiOBHm_Chr7g0212091 RchiOBHm_Chr7g0234291
rosa_laevigata	RLG00000003091 RLG00000034444
rosa_multiflora	Rmu_sc0002775.1_g000016 Rmu_sc0021904.1_g000008 Rmu_ssc0000047.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142410 Rroxscaffold_3G00245830
rosa_samantha	Rh5CG191800 Rh5DG176100 Rh7AG415000 Rh7AG439700 Rh7CG075700 Rh7DG143600 Rh7DG429400
rosa_wichuraiana	Rw1G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	3 cut(s)	34, 45, 157
AluI	AGCT	3 cut(s)	34, 45, 157
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BshFI	GGCC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	16
BssMI	GATC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	34, 45, 65, 75, 119, 157
CviKI_1	RGCY	6 cut(s)	34, 45, 65, 75, 119, 157
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	73
FaeI	CATG	1 cut(s)	186
FaiI	YATR	3 cut(s)	13, 141, 184
FatI	CATG	1 cut(s)	182
FspEI	CC	9 cut(s)	38, 39, 47, 56, 57, 89, 104, 113, 133
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	52, 163
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	125
MluCI	AATT	2 cut(s)	125, 169
MseI	TTAA	1 cut(s)	81
MunI	CAATTG	1 cut(s)	125
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	4 cut(s)	12, 36, 47, 159
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	125, 169
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	125, 169
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.