Rroxscaffold_2G00142410

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80458318 .. 80463204
4887 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00142410.1

Sequence Viewer

Length: 207 bp
ATGGAGGTGGGAGAAGAGATGAAGCAAACAAAGTGGAAGAGAATTGTTCAAAAGAGAATCAGCTTATCAAAGTCATCATCTTCATCTTCTTCTTCTTGTCTTATAAACAATCTTAATGATGGCTGCCTCGTGCACATCTTTAGCATTGATTCTCATGAGTCTTGCAATAGACCAATATTTGGGGGTTGCTTCAATTTGGATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.61

Weight (kDa)

7.69

Isoelectric Point (pI)

75.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 50, 193
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw21I GWGCWC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 135
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 113
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 135
BspHI TCATGA 1 cut(s) 154
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 9, 32
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 14, 49
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 63, 123
CviKI_1 RGCY 2 cut(s) 63, 123
Eam1104I CTCTTC 2 cut(s) 9, 32
EarI CTCTTC 2 cut(s) 9, 32
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 104, 156
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspEI CC 9 cut(s) 19, 105, 140, 165, 166, 167, 168, 182, 186
GluI GCNGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 158
HinfI GANTC 3 cut(s) 57, 149, 158
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 133, 165
Hsp92II CATG 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 110
MboII GAAGA 6 cut(s) 26, 49, 72, 78, 81, 84
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 42, 193, 202
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 1 cut(s) 137
MseI TTAA 1 cut(s) 114
NlaIII CATG 1 cut(s) 158
PagI TCATGA 1 cut(s) 154
PfeI GAWTC 2 cut(s) 57, 149
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PsiI TTATAA 1 cut(s) 104
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 124
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 9, 65
SgeI CNNG 5 cut(s) 108, 140, 142, 167, 174
Sse9I AATT 3 cut(s) 42, 193, 202
SspI AATATT 1 cut(s) 177
TasI AATT 3 cut(s) 42, 193, 202
TfiI GAWTC 2 cut(s) 57, 149
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 35, 72
Van91I CCANNNNNTGG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.